Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b13
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position...    32   0.45 
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane...    32   0.45 
Z74031-8|CAA98451.1|  372|Caenorhabditis elegans Hypothetical pr...    30   2.4  
U80023-2|AAG24035.1|  204|Caenorhabditis elegans Hypothetical pr...    30   2.4  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    29   3.2  
U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical p...    29   5.6  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U61944-1|AAL56622.1|  712|Caenorhabditis elegans Dynamin related...    29   5.6  
AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical ...    29   5.6  
Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z22181-9|CAA80186.1|  453|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U10402-10|AAA19064.1|  355|Caenorhabditis elegans Gro-1 operon g...    28   9.8  
AY052770-1|AAL14109.1|  355|Caenorhabditis elegans GOP-2 protein.      28   9.8  
AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical ...    28   9.8  

>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
            protein 4 protein.
          Length = 2104

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 306  GNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVC--KYSGLPCLTCFSLLILI 145
            GN     + C+++   +     +CI   LSSN+ C C   Y+G  C T  S L LI
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLI 1862


>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
            matrix receptor MUP-4 protein.
          Length = 2104

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -2

Query: 306  GNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVC--KYSGLPCLTCFSLLILI 145
            GN     + C+++   +     +CI   LSSN+ C C   Y+G  C T  S L LI
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLI 1862


>Z74031-8|CAA98451.1|  372|Caenorhabditis elegans Hypothetical
           protein F32D8.8 protein.
          Length = 372

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = -2

Query: 567 SFSSSVWCTVGSVCSTYRIWSSSARPQFRETSRRVKFVVWPILNRFLSAYSSVVAA*KWP 388
           ++S+ V+ T  + CS  + +  +    +R  SRR K   W IL+  ++  S ++ A  + 
Sbjct: 126 NYSTLVYVTSTNKCSDLKYYFQN----YRNNSRRQKPAKWDILSELMTWNSEILGALSFS 181

Query: 387 STGAELNFTV 358
             G  L++ +
Sbjct: 182 FDGVSLHYAM 191


>U80023-2|AAG24035.1|  204|Caenorhabditis elegans Hypothetical
           protein F07C4.6 protein.
          Length = 204

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -1

Query: 838 TCGFPC-SSTYLSVNVSWPNLNCPILT*AILI 746
           TCG  C +STY   N  +P LNC  +T A+ +
Sbjct: 104 TCGLCCQTSTYSCQNAPFPRLNCASVTKAMCL 135


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 59  ANKLKFKNTKKAIRDHVDGKYKCTFEQACINISKEKHVKQGN-PLYLQT 202
           + KL+F      +R    GKYKC    A +N SKE HV++   P+ L +
Sbjct: 278 SGKLEFCLEIPKVRLKDMGKYKCVASLAGLNSSKEFHVERDKIPIVLNS 326


>U29377-9|AAA68718.3|  405|Caenorhabditis elegans Hypothetical
           protein K05F1.1 protein.
          Length = 405

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = -2

Query: 342 SRLNADCRAVHWGNTCS*NQFCSSAALVILERMNNCITPILSSNIVCVCKYSGLPCLTCF 163
           S L   C+ +   + C  ++FCS+  L + ++ NN    I S N+ C        C+   
Sbjct: 71  SSLKVTCKLL---SDCQPDEFCST--LGVCDKKNNECLYISSVNVTCKSDCESSTCILLN 125

Query: 162 SLLILIHAC 136
           ++   IH C
Sbjct: 126 NITKEIHCC 134


>Z81116-13|CAB03300.1|  245|Caenorhabditis elegans Hypothetical
           protein T06C12.14 protein.
          Length = 245

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 835 CGFPC-SSTYLSVNVSWPNLNCPILT 761
           CG  C +S+Y   NV++P LNC  +T
Sbjct: 105 CGLCCQTSSYSCPNVAFPRLNCATIT 130


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 189 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 278
           C C+R  Y  T+   YSCSC    P ++SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQKSC 66


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 189 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 278
           C C+R  Y  T+   YSCSC    P ++SC
Sbjct: 39  CSCQRTTY--TQPQQYSCSCQNTAPVQKSC 66


>U61944-1|AAL56622.1|  712|Caenorhabditis elegans Dynamin related
           protein protein1, isoform b protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 34/127 (26%), Positives = 54/127 (42%)
 Frame = -1

Query: 808 LSVNVSWPNLNCPILT*AILIY*IKFITTTRDDSTKARNKLNGLVLRAVGQARLERALDV 629
           +++ +++ N   P  T A L+  +K      D   ++RN+      RAV     ++   V
Sbjct: 489 VAIELAYINTKHPEFTEANLVTLLKEELLLDDRHGRSRNRHASTGERAVSAHGEQQLQPV 548

Query: 628 LEIRAVDLAAVAVRSQLLFHQLFEQRVVHGGLGLQHVPHLVVVGAAAIQRNQSPRQVCSL 449
             +  VDL AV  + Q    Q   QR  +G LGL         G AA     SP++  S 
Sbjct: 549 PGVNGVDLNAVLQQQQ---QQSQNQRASNGFLGL--------FGNAAASSKTSPQEKQSA 597

Query: 448 ADLEQIP 428
             L ++P
Sbjct: 598 NFLPEVP 604


>AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical
           protein Y5H2A.4 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 189 CICRRKQYYSTK*ALYSCSCAPR*PTRRSC 278
           C C+R  Y +T+   YSCSC    P + SC
Sbjct: 58  CSCQRTTY-TTQPQQYSCSCQNTAPVQASC 86


>Z46787-5|CAA86743.1|  409|Caenorhabditis elegans Hypothetical
           protein C16C10.5 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 22/62 (35%), Positives = 28/62 (45%)
 Frame = +2

Query: 122 KCTFEQACINISKEKHVKQGNPLYLQTQTILLDKIGVIQLFMRSKMTNAAELQNWFYEHV 301
           KC F     +I K  H  +G+PLYL  ++I   KI  I    R     A  LQN   E +
Sbjct: 36  KCFFR----SIFKIGHFPRGSPLYLLEKSITFSKIISIFSGHRMGQHGAIRLQNEVQEGM 91

Query: 302 LP 307
            P
Sbjct: 92  PP 93


>Z22181-9|CAA80186.1|  453|Caenorhabditis elegans Hypothetical
           protein ZK632.11 protein.
          Length = 453

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 50  RDIANKLKFKNTKKAIRDHVDGKYKCTFEQACINISKEKHVKQG 181
           RD   +  F+   +  R+  DG+ +  +    I+  +EKH K G
Sbjct: 121 RDCTQRKDFRRISRKKRESGDGRQRVFYNDVGISKQREKHFKPG 164


>U10402-10|AAA19064.1|  355|Caenorhabditis elegans Gro-1 operon gene
           protein 2 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 398 RNGPRRERN*TLLSLGRLGAGSTPTVGRCTGATRVRKT 285
           + GP   +  ++L LG  G+G T  V R T     RKT
Sbjct: 22  QTGPNVNQKPSILVLGMAGSGKTTFVQRLTAFLHARKT 59


>AY052770-1|AAL14109.1|  355|Caenorhabditis elegans GOP-2 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 398 RNGPRRERN*TLLSLGRLGAGSTPTVGRCTGATRVRKT 285
           + GP   +  ++L LG  G+G T  V R T     RKT
Sbjct: 22  QTGPNVNQKPSILVLGMAGSGKTTFVQRLTAFLHARKT 59


>AF022973-9|AAC25802.2| 1373|Caenorhabditis elegans Hypothetical
           protein F25G6.9 protein.
          Length = 1373

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 352 GVLEQAQRRLSGGA-LGQHVFVKPILQLRRVGHLGAHE 242
           G+L  +Q+RL G   L Q+VF+K    L   GH   H+
Sbjct: 153 GLLSDSQKRLVGNCGLAQNVFLKHQPDLYPTGHESEHD 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,122,870
Number of Sequences: 27780
Number of extensions: 377060
Number of successful extensions: 1300
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)