Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21b12
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 34 0.017
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 30 0.28
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.50
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 28 0.87
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 28 1.1
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 27 2.0
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 26 4.6
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 26 4.6
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.6
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 33.9 bits (74), Expect = 0.017
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +1
Query: 349 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVEFKNKDSLE 528
+ V NLPS+ +L E F + + + R T+ + +PTL A + F+NK S +
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKNKSTD-SKSPTLFAFITFENKCSAD 80
Query: 529 KAL-SEHGAVVEGHALSV 579
A+ S +G+ +G+ L V
Sbjct: 81 NAIASLNGSSFQGNTLKV 98
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 349 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGPIIVTELT 474
L V+NL + + + Q+ L+ELFSK G I + TE++
Sbjct: 421 LFVKNLDDNIVGNTQQ-LEELFSKFGRIKSCTLASYPSTEIS 461
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.9 bits (64), Expect = 0.28
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 391 QEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVE-FKNKDSLE 528
+E++ LFSK GEI + G V T TP VE F+N+D+L+
Sbjct: 45 EEQIYALFSKCGEIRRIIMG---VDRFTKTPCGFCFVEYFENQDALD 88
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.50
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +2
Query: 56 LSKYHSSSSW*PKRKVAELKLRQPNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTES 232
++K S + PK+ E K R +P P K S+KKQK ++K K + + ++ES
Sbjct: 40 IAKQSSKTDVSPKKSKKEAK-RASSPEPSKKSVKKQK-KSKKKEESSSESESESSSSES 96
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 28.3 bits (60), Expect = 0.87
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 394 EKLKELFSKHGEINTVKRGPIIVTELTTTPTLS-AIVEFKNKDSLEKA 534
E L+ +FS+ G+I + + ++ + T +L A +EF NK+S+EKA
Sbjct: 258 EDLELIFSRFGKIISCQ----VIRDKETGDSLQYAFIEFDNKESVEKA 301
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 27.9 bits (59), Expect = 1.1
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 385 DYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVEFKNKDSLEKALSEHGAVVEG 564
DY +EL S +V R I+ + T P A +EF + AL +G+++
Sbjct: 63 DYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHE 122
Query: 565 HALSV 579
L V
Sbjct: 123 RPLKV 127
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 125 PNPSPLKMSLKKQKFQNKPKRTMAYRIKLSMETTESLLKALRTLMSLRR 271
P P PL+ + + +N+P+ +++ +E E++ + RTL R+
Sbjct: 262 PLPVPLQSVMDSEHNENEPRALKRRKVQKLLEPDENIELSTRTLSQWRK 310
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Frame = +1
Query: 361 NLPSSYLFDYQEKLKELFSKH---GEINTVKRGPIIVT 465
N P S L DYQ K+ E S E+NT++ P V+
Sbjct: 255 NTPESLLIDYQSKIPEDLSSSLLPLELNTLQSTPTSVS 292
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 89 PKRKVAELKLRQPNPS---PLKMSLKKQKFQNKPKRTMAYRIKLSMETTES 232
PKR+ E+K P P+ P+K S ++ +P R + R L ++ +S
Sbjct: 316 PKRRPIEVKPAAPVPTPAPPVKTSPHPASYRPQPTRNVEVRPLLMLDDVQS 366
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 25.8 bits (54), Expect = 4.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 557 TTAPCSDSAFSRLSLFLNSTIADNVGVVVSSVTMIGPRLTVLISP 423
T P ++ ++L NST DNV +V S + + TV I P
Sbjct: 389 TKLPAHITSITKLQSLENSTKNDNVPLVTHSPSPMHSSFTVSIKP 433
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,437
Number of Sequences: 5004
Number of extensions: 29127
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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