Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21b12
(581 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT030455-1|ABP87897.1| 1108|Drosophila melanogaster RE64336p pro... 32 0.49
AY051546-1|AAK92970.1| 888|Drosophila melanogaster GH19431p pro... 32 0.49
AE014297-4471|ABI31217.1| 1078|Drosophila melanogaster CG34133-P... 32 0.49
AE014297-4470|AAN14200.2| 1112|Drosophila melanogaster CG34133-P... 32 0.49
AY094900-1|AAM11253.1| 1004|Drosophila melanogaster RE74744p pro... 30 2.0
AF145683-1|AAD38658.1| 1004|Drosophila melanogaster BcDNA.LD2337... 30 2.0
AE013599-1401|AAS64864.1| 1004|Drosophila melanogaster CG8878-PB... 30 2.0
AE013599-1400|AAF58576.1| 1004|Drosophila melanogaster CG8878-PA... 30 2.0
AY095524-1|AAM12255.1| 1258|Drosophila melanogaster LD41783p pro... 30 2.6
AE014134-3368|AAF53983.2| 2759|Drosophila melanogaster CG8677-PA... 30 2.6
L34934-1|AAA73522.1| 224|Drosophila melanogaster RNA binding pr... 29 4.6
AY075519-1|AAL68327.1| 224|Drosophila melanogaster RE69521p pro... 29 4.6
AY070631-1|AAL48102.1| 224|Drosophila melanogaster RE74211p pro... 29 4.6
AY061107-1|AAL28655.1| 595|Drosophila melanogaster LD09531p pro... 29 4.6
AF219009-1|AAF27644.1| 595|Drosophila melanogaster multi-sex-co... 29 4.6
AF116341-1|AAF00976.1| 224|Drosophila melanogaster poly(A)-bind... 29 4.6
AE014298-1312|AAF46473.1| 595|Drosophila melanogaster CG12058-P... 29 4.6
AE013599-599|AAM68852.1| 224|Drosophila melanogaster CG2163-PB,... 29 4.6
AE013599-598|AAF59127.1| 224|Drosophila melanogaster CG2163-PA,... 29 4.6
>BT030455-1|ABP87897.1| 1108|Drosophila melanogaster RE64336p
protein.
Length = 1108
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -1
Query: 566 CPSTTAPCSDSAF-SRLSLFLNSTIADNVGVVVSSVTMIGPRLT 438
C ST S SA S S L STIA ++ +V+SVT+ GP+LT
Sbjct: 360 CSSTNTVVSASASTSAASSSLPSTIAIHMRPMVASVTIAGPKLT 403
>AY051546-1|AAK92970.1| 888|Drosophila melanogaster GH19431p
protein.
Length = 888
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -1
Query: 566 CPSTTAPCSDSAF-SRLSLFLNSTIADNVGVVVSSVTMIGPRLT 438
C ST S SA S S L STIA ++ +V+SVT+ GP+LT
Sbjct: 140 CSSTNTVVSASASTSAASSSLPSTIAIHMRPMVASVTIAGPKLT 183
>AE014297-4471|ABI31217.1| 1078|Drosophila melanogaster CG34133-PB,
isoform B protein.
Length = 1078
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -1
Query: 566 CPSTTAPCSDSAF-SRLSLFLNSTIADNVGVVVSSVTMIGPRLT 438
C ST S SA S S L STIA ++ +V+SVT+ GP+LT
Sbjct: 330 CSSTNTVVSASASTSAASSSLPSTIAIHMRPMVASVTIAGPKLT 373
>AE014297-4470|AAN14200.2| 1112|Drosophila melanogaster CG34133-PA,
isoform A protein.
Length = 1112
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = -1
Query: 566 CPSTTAPCSDSAF-SRLSLFLNSTIADNVGVVVSSVTMIGPRLT 438
C ST S SA S S L STIA ++ +V+SVT+ GP+LT
Sbjct: 364 CSSTNTVVSASASTSAASSSLPSTIAIHMRPMVASVTIAGPKLT 407
>AY094900-1|AAM11253.1| 1004|Drosophila melanogaster RE74744p
protein.
Length = 1004
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 196 VSDQVEHGDDGIAAEGAENADESTEGDQNQEN 291
+S + E +DG E AEN+DES E N+ +
Sbjct: 417 ISYREEFNEDGYPKETAENSDESPESSDNESD 448
>AF145683-1|AAD38658.1| 1004|Drosophila melanogaster BcDNA.LD23371
protein.
Length = 1004
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 196 VSDQVEHGDDGIAAEGAENADESTEGDQNQEN 291
+S + E +DG E AEN+DES E N+ +
Sbjct: 417 ISYREEFNEDGYPKETAENSDESPESSDNESD 448
>AE013599-1401|AAS64864.1| 1004|Drosophila melanogaster CG8878-PB,
isoform B protein.
Length = 1004
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 196 VSDQVEHGDDGIAAEGAENADESTEGDQNQEN 291
+S + E +DG E AEN+DES E N+ +
Sbjct: 417 ISYREEFNEDGYPKETAENSDESPESSDNESD 448
>AE013599-1400|AAF58576.1| 1004|Drosophila melanogaster CG8878-PA,
isoform A protein.
Length = 1004
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 196 VSDQVEHGDDGIAAEGAENADESTEGDQNQEN 291
+S + E +DG E AEN+DES E N+ +
Sbjct: 417 ISYREEFNEDGYPKETAENSDESPESSDNESD 448
>AY095524-1|AAM12255.1| 1258|Drosophila melanogaster LD41783p protein.
Length = 1258
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 397 KLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVEFKNKDSLEKALSE 543
+++E S GE + R I T PTL I+E K K S+E L E
Sbjct: 905 QIEETTSSSGEDDARIRRKCIAPHTKTKPTLEEIIERKLKKSIEMDLPE 953
>AE014134-3368|AAF53983.2| 2759|Drosophila melanogaster CG8677-PA
protein.
Length = 2759
Score = 29.9 bits (64), Expect = 2.6
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 397 KLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVEFKNKDSLEKALSE 543
+++E S GE + R I T PTL I+E K K S+E L E
Sbjct: 905 QIEETTSSSGEDDARIRRKCIAPHTKTKPTLEEIIERKLKKSIEMDLPE 953
>L34934-1|AAA73522.1| 224|Drosophila melanogaster RNA binding
protein protein.
Length = 224
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 385 DYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVEFKNKDSLEKALSEHGAVVEG 564
DY +EL + T+ R I+ + P A +EF +K+ +E AL+ + + G
Sbjct: 104 DYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRG 163
Query: 565 HALSV 579
+ V
Sbjct: 164 RQIKV 168
>AY075519-1|AAL68327.1| 224|Drosophila melanogaster RE69521p
protein.
Length = 224
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 385 DYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVEFKNKDSLEKALSEHGAVVEG 564
DY +EL + T+ R I+ + P A +EF +K+ +E AL+ + + G
Sbjct: 104 DYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRG 163
Query: 565 HALSV 579
+ V
Sbjct: 164 RQIKV 168
>AY070631-1|AAL48102.1| 224|Drosophila melanogaster RE74211p
protein.
Length = 224
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 385 DYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVEFKNKDSLEKALSEHGAVVEG 564
DY +EL + T+ R I+ + P A +EF +K+ +E AL+ + + G
Sbjct: 104 DYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRG 163
Query: 565 HALSV 579
+ V
Sbjct: 164 RQIKV 168
>AY061107-1|AAL28655.1| 595|Drosophila melanogaster LD09531p
protein.
Length = 595
Score = 29.1 bits (62), Expect = 4.6
Identities = 27/77 (35%), Positives = 40/77 (51%)
Frame = +1
Query: 349 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVEFKNKDSLE 528
L VE LP++ D+ LKE+FS++G + V T+ A +EF+ SLE
Sbjct: 149 LYVEALPANATHDW---LKEVFSRYGPVAYVSLPHYPGTKKIKE---FAFIEFEKSGSLE 202
Query: 529 KALSEHGAVVEGHALSV 579
KA+ A ++G LSV
Sbjct: 203 KAVKAF-AQIQG-VLSV 217
>AF219009-1|AAF27644.1| 595|Drosophila melanogaster multi-sex-combs
protein.
Length = 595
Score = 29.1 bits (62), Expect = 4.6
Identities = 27/77 (35%), Positives = 40/77 (51%)
Frame = +1
Query: 349 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVEFKNKDSLE 528
L VE LP++ D+ LKE+FS++G + V T+ A +EF+ SLE
Sbjct: 149 LYVEALPANATHDW---LKEVFSRYGPVAYVSLPHYPGTKKIKE---FAFIEFEKSGSLE 202
Query: 529 KALSEHGAVVEGHALSV 579
KA+ A ++G LSV
Sbjct: 203 KAVKAF-AQIQG-VLSV 217
>AF116341-1|AAF00976.1| 224|Drosophila melanogaster poly(A)-binding
protein II protein.
Length = 224
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 385 DYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVEFKNKDSLEKALSEHGAVVEG 564
DY +EL + T+ R I+ + P A +EF +K+ +E AL+ + + G
Sbjct: 104 DYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRG 163
Query: 565 HALSV 579
+ V
Sbjct: 164 RQIKV 168
>AE014298-1312|AAF46473.1| 595|Drosophila melanogaster CG12058-PA
protein.
Length = 595
Score = 29.1 bits (62), Expect = 4.6
Identities = 27/77 (35%), Positives = 40/77 (51%)
Frame = +1
Query: 349 LLVENLPSSYLFDYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVEFKNKDSLE 528
L VE LP++ D+ LKE+FS++G + V T+ A +EF+ SLE
Sbjct: 149 LYVEALPANATHDW---LKEVFSRYGPVAYVSLPHYPGTKKIKE---FAFIEFEKSGSLE 202
Query: 529 KALSEHGAVVEGHALSV 579
KA+ A ++G LSV
Sbjct: 203 KAVKAF-AQIQG-VLSV 217
>AE013599-599|AAM68852.1| 224|Drosophila melanogaster CG2163-PB,
isoform B protein.
Length = 224
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 385 DYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVEFKNKDSLEKALSEHGAVVEG 564
DY +EL + T+ R I+ + P A +EF +K+ +E AL+ + + G
Sbjct: 104 DYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRG 163
Query: 565 HALSV 579
+ V
Sbjct: 164 RQIKV 168
>AE013599-598|AAF59127.1| 224|Drosophila melanogaster CG2163-PA,
isoform A protein.
Length = 224
Score = 29.1 bits (62), Expect = 4.6
Identities = 17/65 (26%), Positives = 30/65 (46%)
Frame = +1
Query: 385 DYQEKLKELFSKHGEINTVKRGPIIVTELTTTPTLSAIVEFKNKDSLEKALSEHGAVVEG 564
DY +EL + T+ R I+ + P A +EF +K+ +E AL+ + + G
Sbjct: 104 DYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRG 163
Query: 565 HALSV 579
+ V
Sbjct: 164 RQIKV 168
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,365,378
Number of Sequences: 53049
Number of extensions: 306865
Number of successful extensions: 1515
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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