Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21b10
(560 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 28 5.9
11_06_0732 - 26740718-26741704,26741876-26742478 28 5.9
11_06_0098 - 20068488-20068616,20069039-20069257,20069431-200696... 28 5.9
10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505 28 5.9
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 28 5.9
07_03_0457 - 18404577-18405193,18405317-18405563,18405734-184059... 28 5.9
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421... 28 5.9
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 28 5.9
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472... 28 5.9
05_01_0180 + 1268129-1268237,1268382-1268731,1268903-1269808,127... 28 5.9
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 28 5.9
04_03_0328 + 14440877-14441479,14441650-14441955,14442032-14442637 28 5.9
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 28 5.9
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 483 NNAWSAQWYNGVKAKYYRR 427
N AW+ + Y +KAKY++R
Sbjct: 232 NGAWTTRGYQNLKAKYFQR 250
>11_06_0732 - 26740718-26741704,26741876-26742478
Length = 529
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 483 NNAWSAQWYNGVKAKYYRR 427
N AW+ + Y +KAKY++R
Sbjct: 232 NGAWTTRGYQNLKAKYFQR 250
>11_06_0098 -
20068488-20068616,20069039-20069257,20069431-20069606,
20069812-20070034
Length = 248
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 483 NNAWSAQWYNGVKAKYYRR 427
N AW+ + Y +KAKY++R
Sbjct: 164 NGAWTTRGYQNLKAKYFQR 182
>10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505
Length = 916
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 483 NNAWSAQWYNGVKAKYYRR 427
N AW+ + Y +KAKY++R
Sbjct: 232 NGAWTTRGYQNLKAKYFQR 250
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 483 NNAWSAQWYNGVKAKYYRR 427
N AW+ + Y +KAKY++R
Sbjct: 232 NGAWTTRGYQNLKAKYFQR 250
>07_03_0457 -
18404577-18405193,18405317-18405563,18405734-18405953,
18406239-18406333
Length = 392
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 483 NNAWSAQWYNGVKAKYYRR 427
N AW+ + Y +KAKY++R
Sbjct: 136 NGAWTTRGYQNLKAKYFQR 154
>06_03_0228 -
18439659-18440900,18441212-18441736,18441813-18442118,
18442290-18442877
Length = 886
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 483 NNAWSAQWYNGVKAKYYRR 427
N AW+ + Y +KAKY++R
Sbjct: 227 NGAWTTRGYQNLKAKYFQR 245
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 483 NNAWSAQWYNGVKAKYYRR 427
N AW+ + Y +KAKY++R
Sbjct: 232 NGAWTTRGYQNLKAKYFQR 250
>05_03_0226 -
10645036-10646001,10646313-10646828,10646905-10647210,
10647382-10647984
Length = 796
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 483 NNAWSAQWYNGVKAKYYRR 427
N AW+ + Y +KAKY++R
Sbjct: 232 NGAWTTRGYQNLKAKYFQR 250
>05_01_0180 +
1268129-1268237,1268382-1268731,1268903-1269808,
1270120-1271361
Length = 868
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 483 NNAWSAQWYNGVKAKYYRR 427
N AW+ + Y +KAKY++R
Sbjct: 184 NGAWTTRGYQNLKAKYFQR 202
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 483 NNAWSAQWYNGVKAKYYRR 427
N AW+ + Y +KAKY++R
Sbjct: 223 NGAWTTRGYQNLKAKYFQR 241
>04_03_0328 + 14440877-14441479,14441650-14441955,14442032-14442637
Length = 504
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 483 NNAWSAQWYNGVKAKYYRR 427
N AW+ + Y +KAKY++R
Sbjct: 232 NGAWTTRGYQNLKAKYFQR 250
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 27.9 bits (59), Expect = 5.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 483 NNAWSAQWYNGVKAKYYRR 427
N AW+ + Y +KAKY++R
Sbjct: 211 NGAWTTRGYQNLKAKYFQR 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,769,397
Number of Sequences: 37544
Number of extensions: 222352
Number of successful extensions: 452
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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