Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b10
         (560 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    36   0.001
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    31   0.020
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    25   1.7  

>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1022

 Score = 35.9 bits (79), Expect = 0.001
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
 Frame = -3

Query: 495  KTYLNNAWSAQWYNGVKAKYYRRVQPTIPSKPWFYKY--NFKRHETSSLIRMRLGHTCSP 322
            + Y   AW  +W       + RR+ P I  +PW  +   N + H +  L     GH    
Sbjct: 852  RPYSVEAWQREWSTTTSGSWTRRLIPNI--QPWITRRHGNIEFHMSQFL----SGHGFFR 905

Query: 321  AHLATIGVLDSSKC-ECGADIGDLNHIILSCPLF 223
            +HL  +G + S  C  CG +     H I  C ++
Sbjct: 906  SHLHRMGYVPSPVCPACGDENQTAEHTIFICGMY 939


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
            protein.
          Length = 988

 Score = 31.5 bits (68), Expect = 0.020
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 357  LIRMRLGHTCSPAHLATIGVLDSS-KC-ECGADIGDLNHIILSCPLFD 220
            L ++  GH    ++    G+L+ S  C ECG  + D+ H++  CP  D
Sbjct: 912  LTQLLTGHGFLRSYFVEKGILEGSPNCPECGDAVEDVEHVLFHCPRSD 959


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
 Frame = -3

Query: 339  GHTCSPAHLATIGVLDSSKC-ECGADIGDLNHIILSCPLF 223
            GH      L   G   S  C  C   +  + H++  CP F
Sbjct: 933  GHAFVHEFLHVFGFAPSPDCPRCAGSVESVAHVMFECPRF 972


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,713
Number of Sequences: 2352
Number of extensions: 9644
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52563375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)