Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b10
         (560 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    36   0.050
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       33   0.20 
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros...    32   0.61 
AY118355-1|AAM48384.1|  577|Drosophila melanogaster RE01566p pro...    30   2.5  
AE014134-2762|AAF53561.2|  577|Drosophila melanogaster CG17905-P...    30   2.5  

>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
            protein.
          Length = 1219

 Score = 35.5 bits (78), Expect = 0.050
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
 Frame = -3

Query: 528  KNYSHDLVSLPKTYLNNAWSAQWYNGVKAKYYRRVQPTIPSKPWFYKYNFKRHETSSLIR 349
            K+   DL +  K ++ N   + WY  +             S P     N+ R +   +IR
Sbjct: 1085 KHLKADLATKQKEHIINC--SPWYQSINTNTSHPCDYLKQSHP-----NWTRLDQIKIIR 1137

Query: 348  MRLGHTCSPAHLATIGVLDSSKCE-CGADIGDLNHIILSCP 229
            +RLGHT +  H   +       C  C  DI  LNHI  SCP
Sbjct: 1138 LRLGHT-NITHQHYLNPNSIPTCPFCQGDI-SLNHIFNSCP 1176


>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = -3

Query: 519  SHDLVSLPKTYLNNAWSAQWYNGVKAKYYRRVQPT-IPSKPWFYKYNFKRHETSSLIRMR 343
            S DL S  K YL     ++W   +    Y+ + P  I  KP     N  + E ++ IR+R
Sbjct: 1095 SKDLKSRIKLYLKEKKLSEW--ALFMHRYQSINPNCIMFKP---PTNVHKRECATFIRLR 1149

Query: 342  LGHTCSPAHLATIGVLDSSKCECGADIGDLNHIILSC 232
            +GHT S  H   +       C+   D   ++HI+ +C
Sbjct: 1150 IGHTQS-THQHLLMRSARPTCQLCGDELTVDHILNAC 1185


>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
            Drosophila melanogasterDNA for type I retrotransposable
            element  R1Dm.  ).
          Length = 1021

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -3

Query: 339  GHTCSPAHLATIGVLDSSKCECGADIGDLNHIILSCPLF 223
            GH    A L    + D++ C CG    D  HI+ +CPL+
Sbjct: 936  GHGSFNAFLHGRALSDTTACACGDPYEDWMHILCACPLY 974


>AY118355-1|AAM48384.1|  577|Drosophila melanogaster RE01566p
           protein.
          Length = 577

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +3

Query: 252 LNRQCPHRTHTYCYPALRSSLDVPDYTCGLISS 350
           +N+ CP R++   +  + + L+V +Y CG++ +
Sbjct: 405 VNQNCPSRSYPGIWELVMNQLEVGEYMCGMVDT 437


>AE014134-2762|AAF53561.2|  577|Drosophila melanogaster CG17905-PA
           protein.
          Length = 577

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = +3

Query: 252 LNRQCPHRTHTYCYPALRSSLDVPDYTCGLISS 350
           +N+ CP R++   +  + + L+V +Y CG++ +
Sbjct: 405 VNQNCPSRSYPGIWELVMNQLEVGEYMCGMVDT 437


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,921,828
Number of Sequences: 53049
Number of extensions: 374673
Number of successful extensions: 781
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2172596895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)