Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b10
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z82086-2|CAB04995.2|  309|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AF125442-11|AAD12791.1|  624|Caenorhabditis elegans Hypothetical...    27   9.2  

>AL132860-6|CAB60526.1|  373|Caenorhabditis elegans Hypothetical
           protein Y56A3A.9 protein.
          Length = 373

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = -3

Query: 375 RHETSSLIRMRLGHT--CSPAHLATIGVLDSSKC-ECGADIGDLNHIILSC 232
           R   + L R+R GH+  C  +++A I     S C +CG+  GD+NH +L+C
Sbjct: 286 RETRTELARLRCGHSRLCG-SYVARIENRSISPCRKCGSVEGDVNH-LLTC 334


>Z82086-2|CAB04995.2|  309|Caenorhabditis elegans Hypothetical
           protein ZK228.3 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 462 WYNGVKAKYYRRVQPTIPSKPWFYKYNFKRHETSSLIRMRLGHTCSPA 319
           WY  V     R +Q  +PS  +  K +F+   T ++I+ R G   S A
Sbjct: 255 WYPDVNKDVERLLQKLLPSDGYHIKKDFRTQFTKNVIKARDGVVYSVA 302


>AF125442-11|AAD12791.1|  624|Caenorhabditis elegans Hypothetical
           protein H04M03.1 protein.
          Length = 624

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 418 WLYPSVIFCFNAIIPLCTPSIIQIC 492
           WL P V+   N  + L TP  ++IC
Sbjct: 52  WLSPEVLTFLNDCVQLMTPCAVRIC 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,477,467
Number of Sequences: 27780
Number of extensions: 203279
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)