Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b10
         (560 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   6.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 467 HSGIMALKQNITEGYNQPFLPNHG 396
           HS I  L  N+  GY+    P+ G
Sbjct: 3   HSNISELLDNLLRGYDNSVRPDFG 26


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 397 VLQI*F*TPRDFQFDTDEIRPHV 329
           +LQ+   TPRDF  + D +  H+
Sbjct: 86  ILQVLGATPRDFLQNLDALHDHL 108


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 397 VLQI*F*TPRDFQFDTDEIRPHV 329
           +LQ+   TPRDF  + D +  H+
Sbjct: 86  ILQVLGATPRDFLQNLDALHDHL 108


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = +1

Query: 412 NGWLYPSVIFCFNAIIPLCTPSI 480
           + W+   ++ C  +I+ LC  SI
Sbjct: 112 DSWVSLDILLCTASILSLCAISI 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,609
Number of Sequences: 438
Number of extensions: 2935
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)