Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b09
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         29   0.19 
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   1.4  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   5.5  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    25   5.5  
SPCC1840.09 |||NAD dependent epimerase/dehydratase family protei...    24   9.7  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 29.5 bits (63), Expect = 0.19
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 17  HCREESPILSRRIXYFVGRFELLAWPVFPVRQDS 118
           HCR  SP  +  + Y      LLAWP +  + DS
Sbjct: 266 HCRNSSPHDNPILEYLFALVSLLAWPFYRRKLDS 299


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 42  YLDAYXISSGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLVD 167
           +  A  IS  D ++W GL   YA++  +  A K+     ++D
Sbjct: 673 FQSALRISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILD 714



 Score = 23.8 bits (49), Expect = 9.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 36  QSYLDAYXISSGDLSSWPGLSSQYAKT 116
           ++YLDA  I    + +W GL + Y  T
Sbjct: 57  EAYLDAIKIDEKAVLAWQGLWNLYEST 83


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 280 LIFCSVCMCNV*FSFKIVSTNKTL 351
           LI  ++C C +     IV+TNKTL
Sbjct: 109 LILAAIC-CTILIPINIVATNKTL 131


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 319 KIKHYTCKHYKRSITTGLNKY 257
           KIKH +   Y R I + +NKY
Sbjct: 168 KIKHLSFHAYLRKINSNVNKY 188


>SPCC1840.09 |||NAD dependent epimerase/dehydratase family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 276

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 6   LCYDTVEKRAQSYLDAYXISSGDLSSWPGLSSQYAKTRAFALAEKSK 146
           L  +T +  A++ +  Y   S   ++ PGL  +Y KT+  A  E SK
Sbjct: 137 LAIETAKIAAKANVPVYCYVSAHAAA-PGLDPRYIKTKREAEREISK 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,762
Number of Sequences: 5004
Number of extensions: 22889
Number of successful extensions: 35
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)