Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b09
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0018 - 11686420-11687460                                         27   4.1  
01_05_0694 - 24347642-24348246,24349915-24349993,24350473-243506...    27   5.4  
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184...    27   7.1  

>01_03_0018 - 11686420-11687460
          Length = 346

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +3

Query: 18  TVEKRAQSYLDAYXISSGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLV 164
           T+E   +   +A     G +  WP   S    TR   + E   RG GLV
Sbjct: 291 TIELMEEPMRNAEFFRRGVVGGWPNYLSPEMATRIDEITESKFRGSGLV 339


>01_05_0694 -
           24347642-24348246,24349915-24349993,24350473-24350607,
           24351486-24351578,24351801-24351926,24352285-24352332,
           24352552-24352653,24353234-24353317,24353754-24353825,
           24354136-24354292,24354520-24354563,24354806-24354918,
           24355252-24355368,24356330-24356399
          Length = 614

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 45  LDAYXISSGDLSSWPGLSSQYAKT-RAF 125
           LD Y I  G+ + W G+S  Y +T RAF
Sbjct: 66  LDRYQIVEGEHALWDGVSQPYRETIRAF 93


>04_01_0162 +
           1845295-1846317,1846430-1846565,1848436-1848626,
           1848780-1848887,1849001-1849204,1849294-1849525,
           1849602-1849751,1849830-1850007,1850416-1850519,
           1850611-1850933,1851274-1851459,1851672-1851899
          Length = 1020

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 113 LGVLGRQARPGAQISRRNXVCVEIRLGSLLDSV 15
           LG + RQA  GA +S  + + VE  L   LDSV
Sbjct: 756 LGEMYRQADTGAIVSLLSRIAVENSLSDKLDSV 788


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,470,618
Number of Sequences: 37544
Number of extensions: 140362
Number of successful extensions: 296
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)