Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21b06
         (631 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051640-1|AAK93064.1|  205|Drosophila melanogaster GM13948p pro...   267   1e-71
AE014297-307|AAF51987.1|  205|Drosophila melanogaster CG1475-PB ...   267   1e-71
BT024389-1|ABC86451.1|  122|Drosophila melanogaster IP05464p pro...    31   1.3  
AE014296-2379|AAF49745.1|  102|Drosophila melanogaster CG13482-P...    31   1.3  
AF251006-1|AAK28427.1| 1500|Drosophila melanogaster host cell fa...    29   6.9  

>AY051640-1|AAK93064.1|  205|Drosophila melanogaster GM13948p
           protein.
          Length = 205

 Score =  267 bits (654), Expect = 1e-71
 Identities = 117/203 (57%), Positives = 152/203 (74%)
 Frame = +2

Query: 23  MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFL 202
           MTG +N+ +VIDGRGHLLGRLA+V+AK LL+G KV VVRCE++N+SG+F+RNK+K +++L
Sbjct: 1   MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYL 60

Query: 203 RKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXX 382
           RKRCNVNPARGPFHFRAPS+I +K VRGMIPHKT+RG+ AL RLR +DG P P+D     
Sbjct: 61  RKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRV 120

Query: 383 XXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRIT 562
                     L+  R YC VGRLSHE+GW Y+DV++ LE KRK K    + + ++LK++T
Sbjct: 121 VVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLT 180

Query: 563 KDAGXKVSKATTPFTTIIQSYGY 631
             A   ++KA  PF  II+SYGY
Sbjct: 181 VKARENIAKAAEPFNKIIKSYGY 203


>AE014297-307|AAF51987.1|  205|Drosophila melanogaster CG1475-PB
           protein.
          Length = 205

 Score =  267 bits (654), Expect = 1e-71
 Identities = 117/203 (57%), Positives = 152/203 (74%)
 Frame = +2

Query: 23  MTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFL 202
           MTG +N+ +VIDGRGHLLGRLA+V+AK LL+G KV VVRCE++N+SG+F+RNK+K +++L
Sbjct: 1   MTGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYL 60

Query: 203 RKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXX 382
           RKRCNVNPARGPFHFRAPS+I +K VRGMIPHKT+RG+ AL RLR +DG P P+D     
Sbjct: 61  RKRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRV 120

Query: 383 XXXXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRIT 562
                     L+  R YC VGRLSHE+GW Y+DV++ LE KRK K    + + ++LK++T
Sbjct: 121 VVPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLT 180

Query: 563 KDAGXKVSKATTPFTTIIQSYGY 631
             A   ++KA  PF  II+SYGY
Sbjct: 181 VKARENIAKAAEPFNKIIKSYGY 203


>BT024389-1|ABC86451.1|  122|Drosophila melanogaster IP05464p
           protein.
          Length = 122

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/50 (26%), Positives = 18/50 (36%)
 Frame = -3

Query: 491 YEQHHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHH 342
           +  HHG  +  HG    H  +YG      H +     H   +    G HH
Sbjct: 66  HHHHHGPPMHHHGPPPHHHHHYGPPPPPPHYDHHHHHHGSHFDHHHGPHH 115


>AE014296-2379|AAF49745.1|  102|Drosophila melanogaster CG13482-PA
           protein.
          Length = 102

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/50 (26%), Positives = 18/50 (36%)
 Frame = -3

Query: 491 YEQHHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHH 342
           +  HHG  +  HG    H  +YG      H +     H   +    G HH
Sbjct: 46  HHHHHGPPMHHHGPPPHHHHHYGPPPPPPHYDHHHHHHGSHFDHHHGPHH 95


>AF251006-1|AAK28427.1| 1500|Drosophila melanogaster host cell factor
            HCF protein.
          Length = 1500

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
 Frame = +3

Query: 429  ITVM*ADCPMKLDGNTVMLFVSLKTRGRARLLRELPMKR----NLRGSPRMLVXRCRRRQ 596
            +TVM  +  M   GN VM+     +         L  K+    N  GSPR +    +   
Sbjct: 919  VTVMSTNTSMAASGNKVMVLPGTSSNNSPATTTALSAKKSFVFNAGGSPRTVTLATKSIN 978

Query: 597  HHSLPSSNPM 626
              S+P S P+
Sbjct: 979  AKSIPQSQPV 988


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,642,117
Number of Sequences: 53049
Number of extensions: 642600
Number of successful extensions: 1746
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1746
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2621070450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)