Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21b06
(631 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 231 4e-61
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 231 4e-61
AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical ... 31 0.68
AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical ... 30 1.6
U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical pr... 29 2.1
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 2.7
U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical p... 27 8.4
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 231 bits (564), Expect = 4e-61
Identities = 107/201 (53%), Positives = 139/201 (69%)
Frame = +2
Query: 29 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 208
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 209 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 388
RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG AL+ LR Y+G P +
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120
Query: 389 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKD 568
F L+P R +C VGRLSHE+GW+++DVV KLE KRK K +KK+ ++
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQ 180
Query: 569 AGXKVSKATTPFTTIIQSYGY 631
A + + II++ GY
Sbjct: 181 AKKNAAPKIAQYQKIIEALGY 201
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 231 bits (564), Expect = 4e-61
Identities = 107/201 (53%), Positives = 139/201 (69%)
Frame = +2
Query: 29 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 208
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 209 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 388
RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG AL+ LR Y+G P +
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120
Query: 389 XXXXXXFCLKPGRNYCHVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRVAYEKKLKRITKD 568
F L+P R +C VGRLSHE+GW+++DVV KLE KRK K +KK+ ++
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQ 180
Query: 569 AGXKVSKATTPFTTIIQSYGY 631
A + + II++ GY
Sbjct: 181 AKKNAAPKIAQYQKIIEALGY 201
>AF038614-7|AAB92060.2| 664|Caenorhabditis elegans Hypothetical
protein F15E6.9 protein.
Length = 664
Score = 31.1 bits (67), Expect = 0.68
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +2
Query: 428 NYCHVGRLS--HEIGWKYRDVVRKLEDKRKGKAVK-RVAYEKKLKRITKDAGXKV 583
+YC G+ S H I WKYRD V ++ K K A++ R A E K I D KV
Sbjct: 284 DYC-TGKTSILHRIQWKYRDAV-IVQAKEKMSAIELRRAIEAKTNVILHDVEQKV 336
>AF077531-4|AAC64611.1| 437|Caenorhabditis elegans Hypothetical
protein F13C5.1 protein.
Length = 437
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 536 RQLS*QPCPSSCLQAYEQHHGISIQFHGTVCLHDSNY 426
R+ S C S L +E HHGI + G + L D++Y
Sbjct: 322 RKRSSAVCSSGSLTHFESHHGIKLLTIGVLPLDDNSY 358
>U70857-6|AAD31051.1| 189|Caenorhabditis elegans Hypothetical
protein C10G8.3 protein.
Length = 189
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 518 PCPSSCLQAYEQHHGISIQFHGTVCLHD 435
PCP E+ HGI++Q G CLH+
Sbjct: 143 PCPIGQTIVREKIHGITVQLLGKRCLHN 170
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = -3
Query: 482 HHGISIQFHGTVCLHDSNYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*EHS 315
HH H H +G V R H E H + E GTHH + H+
Sbjct: 381 HHEHKEGEHHEHAAHHDEHG-VHHRHHGEHHGTHHSPAHHGEHGTHHGHHGEHHHA 435
Score = 27.9 bits (59), Expect = 6.3
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = -3
Query: 494 AYEQHHGISIQFHGTVCLHDS--NYGQVSDRRHVEQQALQHVDGYQREEGTHHMYVAS*E 321
A+ HHG HG H S ++G + H H G+ G HH + S
Sbjct: 537 AHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHH--GHHGSHGVHHGHHESHG 594
Query: 320 HSCHA 306
H HA
Sbjct: 595 HGHHA 599
>U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical
protein C50E3.2 protein.
Length = 168
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -1
Query: 493 LTNNITVFPSNFMGQSAYMTVITARFQTE 407
L NNI VFPSN + +++ MT+ R +T+
Sbjct: 27 LENNILVFPSN-ISEASGMTLFHGRIETK 54
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,809,676
Number of Sequences: 27780
Number of extensions: 310555
Number of successful extensions: 838
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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