Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21a18
         (510 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   155   3e-40
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   155   3e-40
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   7.4  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   7.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  155 bits (376), Expect = 3e-40
 Identities = 70/85 (82%), Positives = 79/85 (92%)
 Frame = +1

Query: 223 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 402
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 403 VRIPKEQGLLSFWRGNFANVIRYFP 477
           VRIPKEQG LS+WRGN ANVIRYFP
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFP 85



 Score = 27.5 bits (58), Expect = 0.085
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 310 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 468
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 482 QALNFAFKD 508
           QALNFAFKD
Sbjct: 87  QALNFAFKD 95


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  155 bits (376), Expect = 3e-40
 Identities = 70/85 (82%), Positives = 79/85 (92%)
 Frame = +1

Query: 223 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 402
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 403 VRIPKEQGLLSFWRGNFANVIRYFP 477
           VRIPKEQG LS+WRGN ANVIRYFP
Sbjct: 61  VRIPKEQGFLSYWRGNLANVIRYFP 85



 Score = 27.5 bits (58), Expect = 0.085
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 310 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 468
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 482 QALNFAFKD 508
           QALNFAFKD
Sbjct: 87  QALNFAFKD 95


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 148 VIPHPRVPQLPPRHIHLVKIT 210
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 485 PGXGKYLMTLAKLPRQNERRPCS 417
           PG  K+   + K P +   RPC+
Sbjct: 97  PGEKKFRKVITKAPLECMCRPCT 119


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 346 HVSKQIAADQRYKGIVDAFVRIPK 417
           ++ K IAA   +KG+     RIP+
Sbjct: 763 YIQKMIAAAAPFKGMETQDYRIPE 786


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,853
Number of Sequences: 438
Number of extensions: 2863
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)