Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc21a09
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 77 2e-15
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 76 5e-15
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 30 0.25
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 30 0.25
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 27 2.4
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 27 3.1
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.1
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 25 7.2
SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 7.2
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 7.2
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 7.2
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 7.2
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 25 9.5
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 9.5
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 9.5
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 77.4 bits (182), Expect = 2e-15
Identities = 35/52 (67%), Positives = 42/52 (80%)
Frame = +1
Query: 58 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVK 213
SKVS + V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+K
Sbjct: 2 SKVSPANIRSSVETILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIK 53
Score = 73.7 bits (173), Expect = 2e-14
Identities = 39/91 (42%), Positives = 46/91 (50%)
Frame = +3
Query: 381 SYTVRLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXX 560
S T++L +PRP M +C+LGD D AK V M
Sbjct: 49 SGTIKLPNVPRPNMSICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDA 108
Query: 561 XXXSESLIKQIPRLLGPGLNKAGKFPGLLSH 653
SE LIKQIPRLLGPGL+KAGKFP +SH
Sbjct: 109 FIASEVLIKQIPRLLGPGLSKAGKFPSPVSH 139
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 75.8 bits (178), Expect = 5e-15
Identities = 35/52 (67%), Positives = 43/52 (82%)
Frame = +1
Query: 58 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVK 213
SKVS ++ V +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+K
Sbjct: 2 SKVSVASVRSNVEQILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIK 53
Score = 73.3 bits (172), Expect = 3e-14
Identities = 39/91 (42%), Positives = 46/91 (50%)
Frame = +3
Query: 381 SYTVRLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXX 560
S T++L +PRP M +C+LGD D AK V M
Sbjct: 49 SGTIKLPNVPRPNMAICILGDAHDLDRAKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDA 108
Query: 561 XXXSESLIKQIPRLLGPGLNKAGKFPGLLSH 653
SE LIKQIPRLLGPGL+KAGKFP +SH
Sbjct: 109 FIASEVLIKQIPRLLGPGLSKAGKFPSPVSH 139
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 30.3 bits (65), Expect = 0.25
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 52 MSSKVSRDTLYECVNAVLQSSKDKK-RNFLETVELQIGLKNYDPQKDKRFSGTV 210
+SSK+ +D L V +L KK +N+L + L + N P +K ++ TV
Sbjct: 73 ISSKIPQDKLKSTVENLLSGVAGKKSKNYLSALSLLLSNSNVQPFVNKFYTSTV 126
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +1
Query: 40 LTNKMSSKVSRDTLYE---CVNAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 204
+T+K++ V ++ Y C N +++SS K NF +TV + +YD P+ D + G
Sbjct: 920 VTSKLNDLVIKEFTYPSSLCDNVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 27.1 bits (57), Expect = 2.4
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = -2
Query: 321 GQVPSVCTDSLYRFILVEF**KINNIPLKCSFQVNVLYSA--GETLVLLWVIVLQTNLKL 148
G +P+ L+R +++ F + N S ++ + G L LW IV+ T L
Sbjct: 1142 GSIPAFSKSLLHRKVVICFLISVINQNFWMSTLISQAWRFFWGSKLTKLWKIVVMTVSFL 1201
Query: 147 YSLQKVTFLVLRGLKN 100
+ F VLR L N
Sbjct: 1202 VGAWLIIFYVLRKLSN 1217
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 232 LLSGKRTLQCRRNAC 188
LLSG+ +L CR NAC
Sbjct: 153 LLSGQHSLSCRMNAC 167
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 4.1
Identities = 8/35 (22%), Positives = 18/35 (51%)
Frame = -3
Query: 365 NNRLAQATCPLFRLWVKSRQYAPTPCTDSFWWNFN 261
++++ + +C F W+K+ +A D W+ N
Sbjct: 81 HSKVGKKSCKRFMRWLKANAFAEERDIDCIWYQLN 115
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/56 (25%), Positives = 23/56 (41%)
Frame = +1
Query: 130 NFLETVELQIGLKNYDPQKDKRFSGTVKYVYLKGAF*WNVIYFLLKFHQNESVQGV 297
NFL + + L Y+ + +Y Y + + I+F L F N S G+
Sbjct: 384 NFLTFLHIYPQLSIYNLELQLGIEKEYQYPYFESIMWYTAIHFYLAFPDNSSRDGI 439
>SPCC1739.04c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 288
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 49 KMSSKVSRDTLYECVNAVLQSSKDKKRNFLETV 147
K K DT+ E A LQSS DK NF +T+
Sbjct: 215 KRPDKSPFDTMTE---ATLQSSSDKSENFTKTL 244
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -3
Query: 548 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 447
+G+F+ +LF LIQ + + W + + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/19 (47%), Positives = 16/19 (84%)
Frame = +1
Query: 91 VNAVLQSSKDKKRNFLETV 147
+NA+L+ SK+KK N +E++
Sbjct: 370 INALLERSKEKKANVIESL 388
>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = -2
Query: 243 PLKCSFQVNVLYSAGETLVLLWVIVLQTNLKLYSLQKVTF--LVLRGLKNGIHALV 82
P+KCS QVN YS ++ +++ ++ Y QK+ L+L N + +LV
Sbjct: 121 PIKCSNQVNTQYSVSFLFTIMASVLI--SVLNYISQKIFLNGLILGNSHNVVTSLV 174
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = -3
Query: 167 FRPI*SSTVSKKLRFLSLED*RTAFTHS*SVSRDTLDDILFVREPPITTLGSCK 6
F + S K ++ E+ + +F + SV++D+ D +++ P+T + SC+
Sbjct: 96 FNVVKESNDKPKENLVTSEECKASFFSTDSVNKDSTIDYDALQKDPLTYVKSCR 149
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 70 RDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRF 198
++ L++ V SK+ + T+E Q+ N+D QK F
Sbjct: 440 QNVLHDFVEGETSISKESLQQHKNTIENQLAAANWDCQKIDEF 482
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 459 RHNAAGLQERKLAFSAAVCILASPCSFTFNPK*SVGSSHLPI 334
R N G + +L+ A C+L SPC PK G L I
Sbjct: 189 RSNPKGRADGELSIFARQCVLLSPC-LRMLPKEHYGLKDLEI 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,023
Number of Sequences: 5004
Number of extensions: 57056
Number of successful extensions: 140
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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