Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21a09
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...    91   8e-19
AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...    91   8e-19
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...    73   2e-13
AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 44/91 (48%), Positives = 54/91 (59%)
 Frame = +3

Query: 381 SYTVRLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXX 560
           S ++RLK+IPRP M+VCV GDQ H DEA   ++P M                        
Sbjct: 19  SGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDA 78

Query: 561 XXXSESLIKQIPRLLGPGLNKAGKFPGLLSH 653
              SESLIKQIPR+LGPGLNKAGKFP +++H
Sbjct: 79  FIASESLIKQIPRILGPGLNKAGKFPSVVTH 109



 Score = 36.3 bits (80), Expect = 0.019
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +1

Query: 166 KNYDPQKDKRFSGTVKYVYL 225
           KNYDPQKDKRFSG+++  ++
Sbjct: 8   KNYDPQKDKRFSGSIRLKHI 27


>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 44/91 (48%), Positives = 54/91 (59%)
 Frame = +3

Query: 381 SYTVRLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXX 560
           S ++RLK+IPRP M+VCV GDQ H DEA   ++P M                        
Sbjct: 49  SGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDA 108

Query: 561 XXXSESLIKQIPRLLGPGLNKAGKFPGLLSH 653
              SESLIKQIPR+LGPGLNKAGKFP +++H
Sbjct: 109 FIASESLIKQIPRILGPGLNKAGKFPSVVTH 139



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 34/56 (60%), Positives = 45/56 (80%)
 Frame = +1

Query: 58  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKYVYL 225
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++  ++
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHI 57


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 36/78 (46%), Positives = 43/78 (55%)
 Frame = +3

Query: 420 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 599
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 600 LLGPGLNKAGKFPGLLSH 653
           +LGPGLNKAGKFP +++H
Sbjct: 61  ILGPGLNKAGKFPSVVTH 78


>AF098996-1|AAM34815.1|  523|Caenorhabditis elegans Hypothetical
           protein T11F1.7 protein.
          Length = 523

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = -3

Query: 545 GQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTMLLVSKN---ANLH-FRPRYVF*PHRVAS 378
           G+FL KLF +   F SL I    I+G   ++ L+   N    NL  FR    F   R A 
Sbjct: 373 GRFLYKLFYVGTIFGSLKIQYSKIEGLFFLSNLVTIANLDGRNLRIFREIGEFSASRPAV 432

Query: 377 HLIQNNRLAQATCP 336
            +  N  L QA  P
Sbjct: 433 LIRSNKFLTQAVLP 446


>Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical
           protein R04D3.3 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 28  IGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKR 195
           +GGS    + +   +D+L E ++ + +S K K    LET+  Q G K  D    +R
Sbjct: 189 VGGSSMEDVLTSDEKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHSRRR 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,612,680
Number of Sequences: 27780
Number of extensions: 326648
Number of successful extensions: 665
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)