Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21a07
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   4.6  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   4.6  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   6.1  
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ...    25   6.1  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   6.1  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   8.0  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    24   8.0  

>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 116 IDVLQFLSILEQNNASL 66
           + +LQFLSIL QNN  +
Sbjct: 275 VKILQFLSILGQNNPKI 291


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -1

Query: 185 LCEYFFRVKWPLTPVFQFSCPSGIDVLQFLSILEQNNAS 69
           LC+ FF    P     Q SCP  +  L    +  QNNA+
Sbjct: 244 LCDLFFYT--PYLNTIQTSCPWLLRYLTVAVVTNQNNAN 280


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 162 DAKKVFTQKVRGYVVNTLWNLTMKTLVNTQVSNININ 272
           DAKK     +RG+  +       KT++N + SN  IN
Sbjct: 753 DAKKFLNLSLRGFEKHNFSTSLEKTVINFENSNGIIN 789


>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 11  SHNIQYLYWNF*LKIILSTMTRCFVPICSEIG 106
           SH ++Y+     L I +  +TR   PIC + G
Sbjct: 190 SHIVKYVLTGIGLLISIVFLTRNLYPICQQAG 221


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = +1

Query: 19  HSIFVLEFLIKN--YFKHNDALFCSNMLRNWSTSIPEGQENWKTGVKGH 159
           H  F  +  +KN   F H   LF    L   +    +G +   TG KGH
Sbjct: 196 HHKFFCDLCVKNKKVFTHEHTLFSKKGLTKHNEVGDQGSDLEITGFKGH 244


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = -3

Query: 408 FFLFLIIFIDNSFSKIT*VTSLVFVSSETGFIFHENIDGT-APFFRYLC*CLTPVYLLMF 232
           FF FL+ F+  SFS      S +F  S+   ++  +       FF +LC C+   +L   
Sbjct: 119 FFFFLLFFLSFSFS-----FSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLFSL 173

Query: 231 S 229
           S
Sbjct: 174 S 174


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 177 ILFSRQMAFNPSLPIFLS 124
           +LFSR M FNP+ P +L+
Sbjct: 45  VLFSRIMKFNPAHPKWLN 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,318
Number of Sequences: 5004
Number of extensions: 34819
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)