Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21a07
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0337 - 2591689-2593839                                           29   1.4  
12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009     27   4.4  
11_01_0138 - 1155553-1155681,1156431-1156503,1157214-1157437           27   4.4  
06_02_0106 - 11898493-11901471                                         27   7.7  

>12_01_0337 - 2591689-2593839
          Length = 716

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 266 HKYLKKGAVPSIFSWNMKPVSEETKTREVTY 358
           H Y ++G + S + W  K + E  +  EVTY
Sbjct: 590 HAYCRRGNLYSAYGWFQKMLEEGVRPNEVTY 620


>12_02_1104 + 26121288-26122200,26122324-26122506,26122841-26124009
          Length = 754

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 65  TMTRCFVPICSEIGVHQFPKDKKIGRLG 148
           T   CF  + +E+G + F K   +G LG
Sbjct: 206 TFNPCFYSVVAEVGWYNFKKQDLVGHLG 233


>11_01_0138 - 1155553-1155681,1156431-1156503,1157214-1157437
          Length = 141

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 278 KKGAVPSIFSWNMKPVSEETKTRE 349
           KK  +PS F W   P +++ KT E
Sbjct: 17  KKRLIPSCFEWGTVPATKKMKTEE 40


>06_02_0106 - 11898493-11901471
          Length = 992

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 189 VRGYVVNTLWNLTMKTLVNTQVSNIN 266
           + GY+VN  WN+ M ++   Q+  ++
Sbjct: 417 ISGYLVNNKWNMVMGSVRRMQIEGVD 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,352,965
Number of Sequences: 37544
Number of extensions: 176289
Number of successful extensions: 416
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)