Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21a07
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical pr...    30   0.75 
AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical...    29   1.3  
Z92831-1|CAB07367.1|  332|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine...    28   2.3  
Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U41552-8|AAC69099.2|  771|Caenorhabditis elegans Hypothetical pr...    27   4.0  
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical...    27   5.3  
U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z92829-8|CAB07348.1|  305|Caenorhabditis elegans Hypothetical pr...    26   9.2  

>Z72502-1|CAA96585.2|  430|Caenorhabditis elegans Hypothetical
           protein C08B6.2 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 46  IKNYF-KHNDALFCSNMLRNWSTSIPEGQENWKTGVKGHL 162
           I  YF K +++ FC + L+N + SI E ++N+K  +   L
Sbjct: 5   IFQYFRKRSNSKFCGSFLQNVTESIRENEQNYKKTINNKL 44


>AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical
           protein F25G6.1 protein.
          Length = 560

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 130 ENWKTGVKGHLTRKKYSHKKFEVM 201
           E WKTG+ G  T  +YS ++FEVM
Sbjct: 407 EKWKTGLLGVFTEDEYS-ERFEVM 429


>Z92831-1|CAB07367.1|  332|Caenorhabditis elegans Hypothetical
           protein F22G12.3 protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +1

Query: 19  HSIFVLEFLIKNYFKHNDALFCSNMLRNWSTSIPEGQENWKTGVK 153
           + ++++ F IK Y+   D L C N  R   T++ +   +WK  ++
Sbjct: 79  YDVWIISFGIKRYYP--DTLSCMNYYRLLQTNLEDKTADWKMWIE 121


>AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine
           receptor protein 21 protein.
          Length = 469

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 200 ITSNFLCEYFFRVKWPLTPVFQFSCP 123
           ++++ + +Y   + WPL+ +F  SCP
Sbjct: 101 MSTDVIVDYLGNIHWPLSAIFTSSCP 126


>Z68222-7|CAA92504.2|  568|Caenorhabditis elegans Hypothetical
           protein ZK1251.8 protein.
          Length = 568

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 319 FHIP*KYRWYSTFLQIFMLMFDTCVFT 239
           FHIP KY+W ST      L+    V+T
Sbjct: 5   FHIPEKYQWASTLFVHVALIAGVAVYT 31


>U41552-8|AAC69099.2|  771|Caenorhabditis elegans Hypothetical
           protein K07E3.2 protein.
          Length = 771

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +1

Query: 79  FCSNMLRN--WSTSIPEGQENWK 141
           F + +LRN  W+ +I EG E WK
Sbjct: 496 FATRLLRNCLWTAAIKEGTEGWK 518


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 107 LQFLSILEQNNASLCLK*FLIKNSNTNIECYGN 9
           L  L+ + QN+A  C K    +  N  +EC+GN
Sbjct: 438 LDILTQITQNSADACEKLAECEEMNVLLECFGN 470


>AL117202-22|CAB57900.1|  691|Caenorhabditis elegans Hypothetical
           protein Y47D3A.28 protein.
          Length = 691

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 40  FLIKNYFKHNDALFCSNMLRNWSTSIPEGQENWKTGVKGHLT 165
           ++ K       AL   ++ +N STS P+  + WKT  K  LT
Sbjct: 64  YVKKRELTEQGALLKRHLEKNSSTSGPKATDAWKTNKKSVLT 105


>U64848-5|AAB04884.1|  330|Caenorhabditis elegans Hypothetical
           protein C50E3.9 protein.
          Length = 330

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/49 (20%), Positives = 22/49 (44%)
 Frame = -2

Query: 352 NFSSFCFFRNWFHIP*KYRWYSTFLQIFMLMFDTCVFTNVFIVRFHKVF 206
           N+  +C FRNW     K+  +   +  F+     C  +++   +  ++F
Sbjct: 200 NYFYYCTFRNWHSRNFKFHKFGVLIFTFLFSI-ICAMSSILTSQIERIF 247


>Z92829-8|CAB07348.1|  305|Caenorhabditis elegans Hypothetical
           protein F10A3.12 protein.
          Length = 305

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 405 FLFLIIFIDNSFSKIT*VTSLVFVSSETGFI 313
           F+   I  D+ FSK T + SLVF  S  G I
Sbjct: 61  FILFTILDDSGFSKFTGLISLVFSCSFYGMI 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,027,343
Number of Sequences: 27780
Number of extensions: 191349
Number of successful extensions: 509
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)