Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21a07
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    20   9.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   9.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    20   9.5  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 167 EKSIHTKSSRLCRKHFVESDYENIS 241
           E  I +    +C K FV+    N+S
Sbjct: 329 ENVIPSNEELICDKRFVDESANNLS 353


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = -1

Query: 176 YFFRVKWPLTPVFQFSCPSGIDVLQF 99
           Y  RV+W    +++ SC   ++   F
Sbjct: 133 YTGRVEWKPPAIYKSSCEIDVEYFPF 158


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +2

Query: 167 EKSIHTKSSRLCRKHFVESDYENIS 241
           E  I +    +C K FV+    N+S
Sbjct: 344 ENVIPSNEELICDKRFVDESANNLS 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,027
Number of Sequences: 438
Number of extensions: 2751
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)