Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc21a05
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    29   0.31 
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    27   1.2  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   1.6  
SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr...    27   2.2  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    26   2.9  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   3.8  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   5.0  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    22   6.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   6.6  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   6.6  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   6.6  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   8.7  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -2

Query: 485 DGFVEVLPYDAV-----HKRLERVGVLAVDVHDWAAAALFSQT 372
           DGFV++LPYD V     +  L R+G+ +     W  A  F +T
Sbjct: 247 DGFVKILPYDRVFSDAKNSNLTRIGISSKT--SWCIATSFGET 287


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 219 YLVANLKPTRPNRCYKFLAQHALRWEEDYVPHEVIRIVEPSYV 347
           YL+ +L    PN  Y    Q A +  +DY   E IRI+E   V
Sbjct: 32  YLLRSLLANVPNALYHSQLQAACQKFQDYCDLEEIRIIEAKRV 74


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 466 SHMTRFTNDSNELVYSLWMFMIGQ 395
           SH  +F ND  E  Y  W F+  Q
Sbjct: 203 SHTYKFVNDKGEFYYCKWHFITNQ 226


>SPCC965.14c |||cytosine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 348 GMNNEYRISLAKKGGGCPIMNIHS 419
           G++NE  I L +K G CP + I+S
Sbjct: 105 GLSNENLIKLTQKSGECPPLYINS 128


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +3

Query: 105 DTMKLIVNWSGK-EFLRETW---TRFVEDSFPIVNDQEVMDVY 221
           D ++ +  W  K + ++  W   T   E SFP++ND+E + V+
Sbjct: 230 DDLETLPKWPDKVKKMQRNWIGRTTGFEISFPLLNDKETLTVF 272


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 54  GKNQKLTLFKEIRSVKPDTMKLIVNWSGKEFLRETWT 164
           G N  +TL KEI   K        NWS ++FL+  W+
Sbjct: 186 GANDIITLEKEIAMFKKKK-----NWSDEQFLQYVWS 217


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = -2

Query: 326 SDYFVGHVVFFPPKSVLSEELVAPVGACGFEVG 228
           +D   GH +  PP+ +   +++A + +C  ++G
Sbjct: 558 ADLKFGHYMKLPPRIMFYTQMIATIWSCFVQIG 590


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 22.2 bits (45), Expect(2) = 6.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 198 DQEVMDVYLVANLKPTRPNRCYKFLAQHALR 290
           D +++ ++    + P  P    KFLA  ALR
Sbjct: 281 DLDLVQIHPTGFVDPKDPTALTKFLAAEALR 311



 Score = 21.0 bits (42), Expect(2) = 6.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +3

Query: 300 DYVPHEVIRIVEPSYVGMNN 359
           DYV  E++++  P Y+ +N+
Sbjct: 333 DYVTGEMMKLKSPVYLVLNS 352


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 184  SPL*TTKR*WTCTSSPTSNPHAPTGATSSSLN 279
            SP+    R  +  + P SNP+ P    SS++N
Sbjct: 964  SPVAAASRISSSPNMPPSNPYTPIAVASSTVN 995


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 78  FKEIRSVKPDTMKLIVNWSGKEFLRETWTRFVEDSF 185
           F  + S+ P   +LIVN    + +   WT   +D +
Sbjct: 109 FSSVNSLSPSLFQLIVNRMRFDAIHPEWTNGSDDEY 144


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 390 GGCPIMNIHSEYTNSFESFVNRVIWENFYK 479
           GG P+  + SE  + F    ++ I+E +YK
Sbjct: 399 GGKPLKEVFSEILDLFRYIASKDIFEAYYK 428


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 40   PF*DRAKTKNLPFLKKFAV*NPIP 111
            P  + +KT+N+P LKKF   N  P
Sbjct: 1119 PVTNYSKTRNMPSLKKFLTVNQDP 1142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,477
Number of Sequences: 5004
Number of extensions: 49351
Number of successful extensions: 135
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)