Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20p24
         (513 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    27   1.2  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    26   3.8  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   5.0  
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M...    25   8.8  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    25   8.8  

>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 466 HVSAYNTATECHDVVVWLDRSELG 395
           H   Y+ A +C DVVV  D SE+G
Sbjct: 41  HKPIYHPAADCGDVVVVTDCSEIG 64


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 330 SPLIVVSSEIDYNLSCILLLLITRI 256
           SP++ +S+++ YN+  IL  ++ +I
Sbjct: 199 SPIVPISAQLKYNIDAILEYIVKKI 223


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 364 EVNINSEDTLNLVHSYRATLLHRDI 438
           +VNI+ E T +  HS  A  LHRD+
Sbjct: 471 DVNISKEFTSSFRHSKAAHNLHRDL 495


>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 60  VCYLQFLNLKLDIR 101
           VC++ F N+KLD+R
Sbjct: 29  VCFVLFTNIKLDVR 42


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 466 ELETREWERQDMVRWR 513
           ELETR + R++  +WR
Sbjct: 578 ELETRNFRREERAKWR 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,974,278
Number of Sequences: 5004
Number of extensions: 37023
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)