Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20p24
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   7.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.9  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 318 VVSSEIDYNLSCILLL-LITRILFQNKKL*KQIKLV 214
           VVSS I + + CI++L +  R+    +K  K I+ V
Sbjct: 194 VVSSSISFYVPCIVMLGIYCRLYCYAQKHVKSIRAV 229


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 283 YSIVVNHKNSISKQKVVK 230
           Y+IV+N++N+ S +  V+
Sbjct: 485 YTIVINNRNNTSMKGTVR 502



 Score = 20.6 bits (41), Expect = 9.9
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 457 LKRELETREWERQDMVRWR 513
           + R+++   ++ QD+ RWR
Sbjct: 296 INRQVDELNFDIQDLERWR 314


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 358 GTEVNINSEDTLNLVHSY 411
           G  +N+N  DT   VHS+
Sbjct: 911 GKFMNVNMLDTYESVHSF 928


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 364 EVNINSEDTLNLVHSYRATLLHR 432
           E+ ++S +  + +H YR   +HR
Sbjct: 192 ELLVHSLEFSDQIHGYRCRTMHR 214


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +1

Query: 364 EVNINSEDTLNLVHSYRATLLHR 432
           E+ ++S +  + +H YR   +HR
Sbjct: 192 ELLVHSLEFSDQIHGYRCRTMHR 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,514
Number of Sequences: 438
Number of extensions: 2262
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)