Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20p20
         (339 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16275-1|CAA34351.1|  621|Drosophila melanogaster lamin protein.       28   2.7  
X07278-1|CAA30259.1|  622|Drosophila melanogaster protein ( Dros...    28   2.7  
BT001506-1|AAN71261.1|  622|Drosophila melanogaster LD38055p pro...    28   2.7  
AE014134-935|AAF52262.1|  622|Drosophila melanogaster CG6944-PA ...    28   2.7  

>X16275-1|CAA34351.1|  621|Drosophila melanogaster lamin protein.
          Length = 621

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = +1

Query: 151 HTSHRVRPTRIMTTDGLSATAT----SSNVLKCQKWFCPFSTKT-TINSK*RSLGI*LEI 315
           H S R+ P  ++T       A+    SS V+K QKW    +T+T  +NS+  ++     I
Sbjct: 517 HRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRI 576

Query: 316 KKEVSK 333
           K+ VS+
Sbjct: 577 KRIVSQ 582


>X07278-1|CAA30259.1|  622|Drosophila melanogaster protein (
           Drosophila mRNA fornuclear lamin Dm0. ).
          Length = 622

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = +1

Query: 151 HTSHRVRPTRIMTTDGLSATAT----SSNVLKCQKWFCPFSTKT-TINSK*RSLGI*LEI 315
           H S R+ P  ++T       A+    SS V+K QKW    +T+T  +NS+  ++     I
Sbjct: 518 HRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRI 577

Query: 316 KKEVSK 333
           K+ VS+
Sbjct: 578 KRIVSQ 583


>BT001506-1|AAN71261.1|  622|Drosophila melanogaster LD38055p
           protein.
          Length = 622

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = +1

Query: 151 HTSHRVRPTRIMTTDGLSATAT----SSNVLKCQKWFCPFSTKT-TINSK*RSLGI*LEI 315
           H S R+ P  ++T       A+    SS V+K QKW    +T+T  +NS+  ++     I
Sbjct: 518 HRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRI 577

Query: 316 KKEVSK 333
           K+ VS+
Sbjct: 578 KRIVSQ 583


>AE014134-935|AAF52262.1|  622|Drosophila melanogaster CG6944-PA
           protein.
          Length = 622

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
 Frame = +1

Query: 151 HTSHRVRPTRIMTTDGLSATAT----SSNVLKCQKWFCPFSTKT-TINSK*RSLGI*LEI 315
           H S R+ P  ++T       A+    SS V+K QKW    +T+T  +NS+  ++     I
Sbjct: 518 HRSVRIEPNGVITVWSADTKASHEPPSSLVMKSQKWVSADNTRTILLNSEGEAVANLDRI 577

Query: 316 KKEVSK 333
           K+ VS+
Sbjct: 578 KRIVSQ 583


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,795,403
Number of Sequences: 53049
Number of extensions: 300977
Number of successful extensions: 639
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 639
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 777358641
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)