Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20p14
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.7  
SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)                  27   9.9  

>SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 510 QKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARR 638
           +K+  A A L EA + L     + I  R+D ++  +DCEN  R
Sbjct: 5   EKVDPAEA-LLEAQQELATLQRQYICLRKDKKSYTEDCENVIR 46


>SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 926

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -3

Query: 340 VMSTVCGCKYSGSPCFATLSGAWCWIW 260
           V    C CK    PC  + +   CW+W
Sbjct: 66  VRGRACTCKLMPCPCGDSCTRTVCWLW 92


>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +3

Query: 294 KQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL-LEEVIP-QVLC-TGKYAPAV 464
           K   P   HP TVLI    +I L + + L   I LQ  L L+ +IP QVL      AP  
Sbjct: 325 KSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVLIPLHVLAPLQ 384

Query: 465 EMDTNDVIAKIDDLT 509
            + T  V+  +  LT
Sbjct: 385 VVITLQVLTSLQVLT 399


>SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)
          Length = 788

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -3

Query: 580 ISLANKMSDRLASAKSALATVNFCVRSSILAITSFV 473
           ++ A ++S+ LAS KS+L  + F +  + L + SF+
Sbjct: 368 VASAGRLSEDLASLKSSLGLILFNLEDATLDLESFI 403


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,413,412
Number of Sequences: 59808
Number of extensions: 491205
Number of successful extensions: 1171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)