Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20p13
         (713 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126775-1|BAC86684.1|  952|Homo sapiens protein ( Homo sapiens ...    36   0.14 
AY720432-1|AAU14134.1| 1285|Homo sapiens crumbs-like protein 2 p...    35   0.25 
AL445489-4|CAI39793.1| 1285|Homo sapiens crumbs homolog 2 (Droso...    35   0.25 
AL365504-3|CAI41011.1| 1285|Homo sapiens crumbs homolog 2 (Droso...    35   0.25 

>AK126775-1|BAC86684.1|  952|Homo sapiens protein ( Homo sapiens cDNA
            FLJ44823 fis, clone BRACE3046466, weakly  similar to
            Crumbs protein homolog 1 precursor. ).
          Length = 952

 Score = 35.9 bits (79), Expect = 0.14
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +3

Query: 459  LPVPSNRNTLSHSCTERHAQLFLPPAATVS-VEG--GDAC-APEYPGTAS-CKSAGVCSS 623
            LPVPS   +L+ +C +        PAA  S +EG  G  C  P  P  A+ C + G C +
Sbjct: 799  LPVPSKECSLNVTCLDGSPCEGRSPAANCSCLEGLAGQRCQVPTLPCEANPCLNGGTCRA 858

Query: 624  AGQQMDCVTN 653
            AG   +C+ N
Sbjct: 859  AGGVSECICN 868


>AY720432-1|AAU14134.1| 1285|Homo sapiens crumbs-like protein 2
            precursor protein.
          Length = 1285

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +3

Query: 459  LPVPSNRNTLSHSCTERHAQLFLPPAATVS-VEG--GDAC-APEYPGTAS-CKSAGVCSS 623
            LPVPS   +L+ +C +        PAA  S +EG  G  C  P  P  A+ C + G C +
Sbjct: 1131 LPVPSKECSLNVTCLDGSPCEGGSPAANCSCLEGLAGQRCQVPTLPCEANPCLNGGTCRA 1190

Query: 624  AGQQMDCVTN 653
            AG   +C+ N
Sbjct: 1191 AGGVSECICN 1200


>AL445489-4|CAI39793.1| 1285|Homo sapiens crumbs homolog 2
            (Drosophila) protein.
          Length = 1285

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +3

Query: 459  LPVPSNRNTLSHSCTERHAQLFLPPAATVS-VEG--GDAC-APEYPGTAS-CKSAGVCSS 623
            LPVPS   +L+ +C +        PAA  S +EG  G  C  P  P  A+ C + G C +
Sbjct: 1131 LPVPSKECSLNVTCLDGSPCEGGSPAANCSCLEGLAGQRCQVPTLPCEANPCLNGGTCRA 1190

Query: 624  AGQQMDCVTN 653
            AG   +C+ N
Sbjct: 1191 AGGVSECICN 1200


>AL365504-3|CAI41011.1| 1285|Homo sapiens crumbs homolog 2
            (Drosophila) protein.
          Length = 1285

 Score = 35.1 bits (77), Expect = 0.25
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = +3

Query: 459  LPVPSNRNTLSHSCTERHAQLFLPPAATVS-VEG--GDAC-APEYPGTAS-CKSAGVCSS 623
            LPVPS   +L+ +C +        PAA  S +EG  G  C  P  P  A+ C + G C +
Sbjct: 1131 LPVPSKECSLNVTCLDGSPCEGGSPAANCSCLEGLAGQRCQVPTLPCEANPCLNGGTCRA 1190

Query: 624  AGQQMDCVTN 653
            AG   +C+ N
Sbjct: 1191 AGGVSECICN 1200


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,313,374
Number of Sequences: 237096
Number of extensions: 2162913
Number of successful extensions: 5248
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5247
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)