Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20p09
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 47 3e-06
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 31 0.20
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 29 0.46
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch... 26 5.6
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 25 7.5
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 25 7.5
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce... 25 9.9
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 25 9.9
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 25 9.9
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 46.8 bits (106), Expect = 3e-06
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
Frame = +1
Query: 283 NFAIVHILGKQWRVTDGDLLVVEGYWPP-NIGDQITLDKVLVAATKDFSLIGRPLVQPGL 459
++A +I + + + GD L + + +GD I LDK+ ++DF+L G P V P L
Sbjct: 805 HYADAYIFNRHFVIAKGDQLGLPFHLKGVQVGDTIRLDKIASFGSRDFTLFGNPYVDPSL 864
Query: 460 VTVTATIISKGLSHTRTHFXXXXXXQFMRINFQRAQQTILR 582
T+ A ++S S + R+ + TILR
Sbjct: 865 FTIEAVVLSFPKSALSVRVKHKRRHRHDRVMKHKQTYTILR 905
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 30.7 bits (66), Expect = 0.20
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Frame = -2
Query: 242 MTSFDVSATDLFSDGTKLVTNLDKIPPC------VPPNILATLCSPDRRSAMIDDNYLLL 81
+T FD + +++ G K+++N+D++ C VP LA L SP+ + +IDD +
Sbjct: 260 ITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETK--LIDDGSHVH 317
Query: 80 NTSMCLKLIP 51
N + IP
Sbjct: 318 NVYQHIFYIP 327
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 29.5 bits (63), Expect = 0.46
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 588 VYS*YCLLCSLKIYSHKLLP 529
+YS Y LLC IYS+KL+P
Sbjct: 458 LYSFYALLCCYYIYSYKLIP 477
>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 119
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 7 NRLSNFQNVLIFKWEGINFKHIEV 78
N+ SN QN+ IF W+ NF+ I +
Sbjct: 8 NQFSNLQNIKIFTWKA-NFESIRI 30
>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 64 KHIEVFNNK*LSSIMALLRSGLQRVAN 144
KHI F++ LSS+ L RS + R+AN
Sbjct: 87 KHIACFHHLLLSSLPCLPRSEIYRLAN 113
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 380 K*HWIKYLLLPLKTSRLLAAHWSNL 454
K HW+KY ++LL + WSNL
Sbjct: 886 KKHWLKYKKNRSTFAKLLFSTWSNL 910
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.4 bits (53), Expect = 7.5
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 6/34 (17%)
Frame = +3
Query: 525 EKEAIYENKFSKSTTN------NIKNKLSGNRKQ 608
+ EAIYENK ++ TN N++N SGN Q
Sbjct: 13 DTEAIYENKENEYQTNITNETSNVQNLSSGNDDQ 46
>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 324
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/24 (33%), Positives = 16/24 (66%)
Frame = -1
Query: 447 DQWAANKREVFSGSNKYFIQCYLI 376
++W+ K +VF S+++F C +I
Sbjct: 276 EKWSPGKYDVFGSSHQWFHVCVII 299
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 9.9
Identities = 7/26 (26%), Positives = 17/26 (65%)
Frame = +2
Query: 50 KELTLNTLKYLITNNYHLSWHFCDRD 127
++ ++ L+Y+ N L+W+FC ++
Sbjct: 159 QDFNVDVLRYVTLPNLLLNWYFCTQE 184
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 25.0 bits (52), Expect = 9.9
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 456 SRLDQWAANKREVFSGSNKYFIQCYLITDVWWPVAFDDKEITISHAPLF 310
SR+ Q +A V + ++ Y Y TDV +P+A DDK ++ P F
Sbjct: 174 SRIGQKSARLEHVDTMNSSY--SSYK-TDVKYPLALDDKLSSVPTLPKF 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,837
Number of Sequences: 5004
Number of extensions: 59711
Number of successful extensions: 198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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