Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20p09
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0078 - 27536211-27536282,27536396-27536470,27537411-275375... 46 4e-05
02_02_0328 - 9004670-9004753,9004873-9004947,9005031-9005132,900... 45 6e-05
02_04_0376 - 22474473-22476947 31 1.1
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811... 29 2.5
11_03_0127 - 10408628-10409106,10409188-10409821 29 4.4
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 29 4.4
01_02_0104 + 11163634-11163691,11163929-11164193,11165041-111651... 29 4.4
03_03_0219 - 15519076-15520050,15520376-15520579,15520755-155207... 28 7.7
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907... 28 7.7
>05_07_0078 -
27536211-27536282,27536396-27536470,27537411-27537512,
27538153-27538233,27538322-27538744
Length = 250
Score = 45.6 bits (103), Expect = 4e-05
Identities = 29/104 (27%), Positives = 52/104 (50%)
Frame = +1
Query: 286 FAIVHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVT 465
FA+V I Q++V++GD + E ++ D++ L++VL+ ++ ++IGRP + T
Sbjct: 137 FAVVQIGSHQFKVSNGDSIFTERLKFCDVNDKLILNRVLMLGSQSQTVIGRPTLPD--AT 194
Query: 466 VTATIISKGLSHTRTHFXXXXXXQFMRINFQRAQQTILRINSVE 597
V A + L F + R R + T LRI ++E
Sbjct: 195 VHAVVEEHALDAKVIIFKKKRRKNYRRTKGHRQELTKLRITNIE 238
>02_02_0328 -
9004670-9004753,9004873-9004947,9005031-9005132,
9005681-9005761,9006233-9006535
Length = 214
Score = 44.8 bits (101), Expect = 6e-05
Identities = 31/103 (30%), Positives = 48/103 (46%)
Frame = +1
Query: 286 FAIVHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVT 465
FA+V I +Q+ V G + + N+ DQI L+KVL+ +T+D + IG P+V
Sbjct: 97 FAVVMIGSRQYIVMPGRYIYTQRLKGANVNDQIILNKVLLVSTRDKAYIGMPVVTN--AA 154
Query: 466 VTATIISKGLSHTRTHFXXXXXXQFMRINFQRAQQTILRINSV 594
V A + +G F ++ R R T LRI +
Sbjct: 155 VHAVVEEQGRDDKVIVFKYKKKKKYQRKLGHRQPNTRLRITGI 197
>02_04_0376 - 22474473-22476947
Length = 824
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 320 RHCLPSMWTIAKFLEAFCSINLLHVAMT 237
R C P++WT ++ FC+ +H AMT
Sbjct: 332 RGCKPNVWTYNALVQGFCNEGKVHKAMT 359
>04_04_0214 -
23674270-23676858,23677574-23680843,23680941-23681119,
23681200-23681559,23681645-23682086,23682199-23682332,
23682479-23682680
Length = 2391
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -2
Query: 320 RHCLPSMWT-IAKFL--EAFCSINLLHVAMTSFDVSATDLFSDGTKLVTNLDKI 168
+H SMW ++K L E FC +L+V S + T ++G K V DKI
Sbjct: 186 KHGYMSMWERLSKSLPFEVFCDTQVLNVKRNSCGANVTIKNNNGEKQVLEFDKI 239
>11_03_0127 - 10408628-10409106,10409188-10409821
Length = 370
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = -2
Query: 338 RSPSVTRHCLPSMWTIAKFLEAFCSINLLHVAMTSFDVSATDLFSDGTKLVTNLDKIPPC 159
R P+ RH LP EAF ++ +H A A LF + + V + P C
Sbjct: 54 RFPTRHRHDLPETAMQDAAREAFLRLSSIHRAELVSTEFAHHLFREESNSVCTVQDTPCC 113
Query: 158 VPPNILATLCSPDRRSAMIDDNY 90
P + TL S R + +DD Y
Sbjct: 114 YNP--IVTLLS--RWAEAVDDFY 132
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/91 (25%), Positives = 43/91 (47%)
Frame = -2
Query: 317 HCLPSMWTIAKFLEAFCSINLLHVAMTSFDVSATDLFSDGTKLVTNLDKIPPCVPPNILA 138
H LP + A+ SINL + + FDV+ L + T++V + ++ V PN
Sbjct: 211 HGLPHRDVTVRVESAWSSINLYDLLIVLFDVN-RHLKTPDTRVVKLIKRLGAEVNPNQKR 269
Query: 137 TLCSPDRRSAMIDDNYLLLNTSMCLKLIPSH 45
LC + +++D LL + + +P++
Sbjct: 270 ILCM--NKVDLVEDKKDLLKVAKEFEDLPAY 298
>01_02_0104 +
11163634-11163691,11163929-11164193,11165041-11165163,
11165275-11165311,11165320-11165514,11165673-11165792,
11165979-11166173
Length = 330
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = -2
Query: 368 FGGQ*PSTTRRSPSVTRHCLPSM---WTIAKFLEAFCSINLLHVAMTSFDVSATDLFSDG 198
FGGQ +T P+ + + T + + + + LLH+ S +S+ L +
Sbjct: 74 FGGQTGDSTSVRPAASTRSDRQINLGQTTIRRIRGYHKLKLLHLHTPSLVLSSLQLAAVQ 133
Query: 197 TKLVTNLDKIPPCVPPNI 144
+ +PPC+PP+I
Sbjct: 134 AAAEFPHEPLPPCLPPSI 151
>03_03_0219 -
15519076-15520050,15520376-15520579,15520755-15520791,
15522025-15522104
Length = 431
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 175 SRFVTSLVPSENKSVAETSKE 237
SRFVT+LVPS S AET ++
Sbjct: 189 SRFVTTLVPSVGLSTAETLRK 209
>01_01_1145 +
9073973-9074281,9075440-9075998,9076088-9076241,
9077475-9077565,9077722-9077793,9077879-9078390,
9078854-9078923,9079514-9079579,9080266-9080570,
9080872-9081006,9081141-9081204,9081429-9081574,
9081669-9081773,9082310-9082490
Length = 922
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 510 PFQKEEKEAIYENKFSKSTTNNIKNKLSGNRKQ 608
PFQ + + +NKF + N KN+ RK+
Sbjct: 740 PFQHPSHQLLEKNKFQQQRYNKFKNRCIAERKK 772
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,182,295
Number of Sequences: 37544
Number of extensions: 360856
Number of successful extensions: 978
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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