Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20p09
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46937-6|CAH10805.1| 171|Caenorhabditis elegans Hypothetical pr... 101 5e-22
Z83241-2|CAB05816.2| 435|Caenorhabditis elegans Hypothetical pr... 30 1.3
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 30 1.7
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 30 1.7
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (... 30 1.7
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ... 30 1.7
Z49132-6|CAA88985.1| 406|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical pr... 28 6.9
U64842-2|AAB37084.1| 462|Caenorhabditis elegans Hypothetical pr... 28 6.9
U12787-1|AAA92672.1| 458|Caenorhabditis elegans HMG CoA synthas... 28 6.9
Z35603-1|CAA84673.1| 1017|Caenorhabditis elegans Hypothetical pr... 27 9.1
X75564-1|CAA53244.1| 1017|Caenorhabditis elegans myosin IA protein. 27 9.1
>Z46937-6|CAH10805.1| 171|Caenorhabditis elegans Hypothetical
protein F43C1.6 protein.
Length = 171
Score = 101 bits (242), Expect = 5e-22
Identities = 57/160 (35%), Positives = 91/160 (56%), Gaps = 6/160 (3%)
Frame = +1
Query: 133 RVANIFGGTQGGILSRFV--TSLVPSENKSVAETS---KEVIATCNKLI-EQNASRNFAI 294
R A++ + IL R + S+ S V +T KEV + + + E+ R FA+
Sbjct: 5 RCASLLLSSSQSILRRSIQSASVGTSSEAQVIDTEQVQKEVFKSISDEVNEEKRQRLFAV 64
Query: 295 VHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTVTA 474
V++ G+QW+V+DGDL+ +EG P N+GD+I L+KVL+ +FSL GRPL+ VTV A
Sbjct: 65 VYVNGRQWKVSDGDLINMEGNLPLNVGDEIKLEKVLMVGGTNFSLFGRPLLDASAVTVDA 124
Query: 475 TIISKGLSHTRTHFXXXXXXQFMRINFQRAQQTILRINSV 594
++ K ++ H+ Q +N++ + T+LRI SV
Sbjct: 125 VVVEKKTTNPELHYVHLNHHQTKFLNWKSDEATVLRIKSV 164
>Z83241-2|CAB05816.2| 435|Caenorhabditis elegans Hypothetical
protein T25C8.1 protein.
Length = 435
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/67 (25%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = -2
Query: 299 WTIAKFLEAFCSINLLHVAMTSFDVSATDLFSDGT--KLVTNLDKIPPCVPPNI-LATLC 129
++ +K L A C++N + + +++ +++S +L+ LDK P +PPN+ + +
Sbjct: 282 FSTSKTLVAACAMNGGNALEATLKMNSPEVYSSNRLQELLNQLDKSAPAMPPNLRIDPIF 341
Query: 128 SPDRRSA 108
P+R S+
Sbjct: 342 IPERGSS 348
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 376 HRCLVASSLRRQGDHHQSRATVYQVCGQLQNFLKH-FVRSIYYM 248
H C V S D H +AT+ V G+L NF ++ F RS+ M
Sbjct: 822 HLCSVISLKTHLSDVHSKQATLELVSGELDNFSENRFDRSLMLM 865
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 376 HRCLVASSLRRQGDHHQSRATVYQVCGQLQNFLKH-FVRSIYYM 248
H C V S D H +AT+ V G+L NF ++ F RS+ M
Sbjct: 822 HLCSVISLKTHLSDVHSKQATLELVSGELDNFSENRFDRSLMLM 865
>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 5
protein.
Length = 1434
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 435 PPIGPTWISNGYRYNNF*GIIPH*NPFQKEEKEAIYENKFSKSTTNNIK--NKLSGNRKQ 608
PP PT + YR PH NPF +EE+E E++F T + ++ SGN +
Sbjct: 154 PPPAPTKAAEEYRRQ------PHQNPFDEEEEE---ESQFGGGTLSGRDPFDEDSGNSNE 204
Query: 609 NQ 614
NQ
Sbjct: 205 NQ 206
>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
protein Y38C1AB.4 protein.
Length = 1393
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 435 PPIGPTWISNGYRYNNF*GIIPH*NPFQKEEKEAIYENKFSKSTTNNIK--NKLSGNRKQ 608
PP PT + YR PH NPF +EE+E E++F T + ++ SGN +
Sbjct: 154 PPPAPTKAAEEYRRQ------PHQNPFDEEEEE---ESQFGGGTLSGRDPFDEDSGNSNE 204
Query: 609 NQ 614
NQ
Sbjct: 205 NQ 206
>Z49132-6|CAA88985.1| 406|Caenorhabditis elegans Hypothetical
protein ZK666.6 protein.
Length = 406
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 509 VLVWDNPLEIIVAVTVTNPGWTNGRPISEKSLVAATSTLSNV 384
V VWD P + + GW G PIS+ +L + S+V
Sbjct: 322 VWVWDQPQGMPQPQLQSYAGWNPGYPISDSTLTGVLNQQSSV 363
>Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical
protein C18D1.1 protein.
Length = 645
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 157 TQGGILSRFVTSLVPSENKSVAETSKEVIATCNKLIEQNASRNFAIVHILGKQWRVTDGD 336
T GG S +S PS + +AET ++ + ++LI+ + N + IL +Q D +
Sbjct: 35 TSGGSASPTSSSGAPSSSSIMAETDEKDMFMPSQLIQNGLANNQLMSMILQQQSNQADSN 94
Query: 337 L 339
+
Sbjct: 95 I 95
>U64842-2|AAB37084.1| 462|Caenorhabditis elegans Hypothetical
protein F25B4.6 protein.
Length = 462
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 322 VTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTVTATIISKGLSH 501
VTD + +E Y+P N DQ L+K ++ ++ IG Q G + I+S L+
Sbjct: 11 VTDVGIGAIELYFPQNFVDQNDLEKFNNVSSGKYT-IGLGQQQMGFCSDNEDIVSISLTV 69
Query: 502 TR 507
TR
Sbjct: 70 TR 71
>U12787-1|AAA92672.1| 458|Caenorhabditis elegans HMG CoA synthase
protein.
Length = 458
Score = 27.9 bits (59), Expect = 6.9
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 322 VTDGDLLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTVTATIISKGLSH 501
VTD + +E Y+P N DQ L+K ++ ++ IG Q G + I+S L+
Sbjct: 7 VTDVGIGAIELYFPQNFVDQNDLEKFNNVSSGKYT-IGLGQQQMGFCSDNEDIVSISLTV 65
Query: 502 TR 507
TR
Sbjct: 66 TR 67
>Z35603-1|CAA84673.1| 1017|Caenorhabditis elegans Hypothetical
protein T02C12.1 protein.
Length = 1017
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +1
Query: 40 FKWEGINFKHIEVFNNK*LSSIMALLRSGLQRVANIFGGTQGGILSRFVTSLVPSENKS 216
++ EGI + IE FNNK + ++ + R+G+ + + + G + + + + KS
Sbjct: 428 YEREGIKWVKIEYFNNKVICDLVEIPRTGILSILDEACASIGNVTDKVFLGELDKKLKS 486
>X75564-1|CAA53244.1| 1017|Caenorhabditis elegans myosin IA protein.
Length = 1017
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = +1
Query: 40 FKWEGINFKHIEVFNNK*LSSIMALLRSGLQRVANIFGGTQGGILSRFVTSLVPSENKS 216
++ EGI + IE FNNK + ++ + R+G+ + + + G + + + + KS
Sbjct: 428 YEREGIKWVKIEYFNNKVICDLVEIPRTGILSILDEACASIGNVTDKVFLGELDKKLKS 486
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,621
Number of Sequences: 27780
Number of extensions: 332942
Number of successful extensions: 867
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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