Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20p09
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    24   1.5  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    24   1.5  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.0  

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 519 KEEKEAIYENKFSKSTTNNIKNKLSGNRKQNQ*GKK 626
           K E+E   E K   S +NN  + +S     N   KK
Sbjct: 70  KRERERSKERKIISSLSNNYISNISNYNNNNNYNKK 105


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 519 KEEKEAIYENKFSKSTTNNIKNKLSGNRKQNQ*GKK 626
           K E+E   E K   S +NN  + +S     N   KK
Sbjct: 70  KRERERSKERKIISSLSNNYISNISNYNNDNNYNKK 105


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 519 KEEKEAIYENKFSKSTTNNIKNKLSGNRKQNQ*GKK 626
           K E+E   E K   S +NN  + +S     N   KK
Sbjct: 308 KTERERSKERKIISSLSNNYISNISNYNNNNNYNKK 343


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 224 SATDLFSDGTKLVTNL-DKIPPCVPPNILATLCSPDRRSAMIDDNY 90
           S  D  SDG   +  + DK+   +   I A   SP  RS M+D  Y
Sbjct: 37  SFMDSNSDGIGDLKGIKDKLSHFIESGITAIWLSPINRSPMVDFGY 82


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 15/66 (22%), Positives = 27/66 (40%)
 Frame = +1

Query: 235  EVIATCNKLIEQNASRNFAIVHILGKQWRVTDGDLLVVEGYWPPNIGDQITLDKVLVAAT 414
            EVI+  + +++QN  ++   +  +G  +    G     E    P  G   TL +  +   
Sbjct: 819  EVISDFDAILDQNKFKDIIKIKTIGSTYMAASGITESAESEDGPRWGHLSTLVEFALELK 878

Query: 415  KDFSLI 432
            K  S I
Sbjct: 879  KALSSI 884


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 420 LLAYWPPIGPTWI 458
           L+ +W P+ P WI
Sbjct: 498 LIEHWMPLLPNWI 510


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 337 LLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTV 468
           L V+  Y P + G+++TL   ++ +   F L+   ++ P  + V
Sbjct: 261 LTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 304


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +1

Query: 337 LLVVEGYWPPNIGDQITLDKVLVAATKDFSLIGRPLVQPGLVTV 468
           L V+  Y P + G+++TL   ++ +   F L+   ++ P  + V
Sbjct: 261 LTVLTFYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVV 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,325
Number of Sequences: 438
Number of extensions: 4139
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)