Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20p08
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    29   0.78 
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    27   2.4  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    27   2.4  
SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    26   5.5  

>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 526 TCGRCRCEQCARPRPLPSRWLCGSCLCSAEACVDYAS 636
           T G C    C R R  PS++ C SC C+  + +++ S
Sbjct: 399 TNGGCYSYIC-RSRSCPSKYQCYSCRCARNSSLEFTS 434


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 511 SIVCETCGRCRCEQCA--RPRPLPSRWLCGS 597
           S +  TCG   CEQCA  R R  P+   CG+
Sbjct: 263 SPIATTCGHHFCEQCAITRYRKTPTCIQCGA 293


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 156 FLLLISTTAFFVTVPNSCGFTALILIHILMENRER*RYAPTKRPFRSLAHSA 1
           FL+L  T ++ +++PN   FT     HIL  +R        KRP+R +  S+
Sbjct: 205 FLILAGTDSYGISLPNLGIFT-----HILRNSRNDLSNYLKKRPYREVIESS 251


>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 89  SAVNPHEFGTVTKNAVVEI 145
           S+ NPH F +VTK  VV I
Sbjct: 216 SSANPHHFLSVTKQGVVAI 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,929,848
Number of Sequences: 5004
Number of extensions: 26843
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)