Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20p06
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   2.6  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   3.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.5  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.9  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   7.9  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 204 YLISACKDGKPMLRQGETGDWIGTFEGHKGAVWGVALT 317
           +L   C  G P +RQG T   +G  +      +G+A++
Sbjct: 17  FLFDKCS-GYPSIRQGTTSYCLGCGDSCHKCKYGIAMS 53


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -2

Query: 547 LVCPFIFSIGPASSLLRSKTR---ISFSLLAVTNNVSSALKLTLFTMCSCSKVWTISPYR 377
           ++ PF   + P+ SLL + TR   ++  ++A    V S+  + +  +     +  +S   
Sbjct: 53  VINPFFCDMSPSLSLLCADTRLNKLAVFIVAGAVGVFSSPTILISYIYILMAILRMSADG 112

Query: 376 ASHNFAVKSAAPLAAKFAF 320
              NF+  S+ P AA  ++
Sbjct: 113 GCRNFSTCSSHPTAAFISY 131


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 616 RIVLSSLTLTMRELFRNTAC 557
           R+VLS+ +   REL ++T C
Sbjct: 47  RVVLSACSPYFRELLKSTPC 66


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 607  ILCASGIVTVEKKSK 651
            + CASG   VE KSK
Sbjct: 1709 VSCASGCTAVETKSK 1723


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/40 (22%), Positives = 17/40 (42%)
 Frame = -1

Query: 497 VKNSYKFLIASSHQQCVIGIEIDTFHNVFMFKSVDHITIS 378
           VK   +  +   + +   G E+D  HN   F  +D   ++
Sbjct: 510 VKGMVRIFLGPKYDE--FGHEVDLVHNYMNFMQMDEFVVN 547


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/40 (22%), Positives = 17/40 (42%)
 Frame = -1

Query: 497 VKNSYKFLIASSHQQCVIGIEIDTFHNVFMFKSVDHITIS 378
           VK   +  +   + +   G E+D  HN   F  +D   ++
Sbjct: 510 VKGMVRIFLGPKYDE--FGHEVDLVHNYMNFMQMDEFVVN 547


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 368 QFCCKIGCPTSSQVCILCKCHTPN 297
           Q C +I    SS    LCKC   N
Sbjct: 654 QLCSEISESYSSNNKTLCKCDAQN 677


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/40 (22%), Positives = 17/40 (42%)
 Frame = -1

Query: 497 VKNSYKFLIASSHQQCVIGIEIDTFHNVFMFKSVDHITIS 378
           VK   +  +   + +   G E+D  HN   F  +D   ++
Sbjct: 136 VKGMVRIFLGPKYDE--FGHEVDLVHNYMNFMQMDEFVVN 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,955
Number of Sequences: 438
Number of extensions: 4309
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)