Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20p05
         (676 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0650 - 18411588-18411645,18412020-18412172,18412340-184124...   158   4e-39
04_04_1468 + 33811471-33811657,33811888-33811980,33812899-338130...    32   0.48 
02_03_0085 + 15063444-15063889,15064324-15065311                       31   1.1  
07_01_0662 + 4972953-4973645,4973758-4974046,4974790-4974803,497...    29   2.6  
11_06_0110 + 20212221-20214011,20214072-20214368                       29   3.4  
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157...    29   4.5  
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047...    28   5.9  
05_01_0240 - 1791138-1791470                                           28   7.8  

>04_03_0650 -
           18411588-18411645,18412020-18412172,18412340-18412407,
           18412499-18412600,18412695-18412766,18412843-18412891,
           18412971-18413104,18413488-18413554,18414471-18414574,
           18414677-18414793,18415538-18415647,18415763-18415772
          Length = 347

 Score =  158 bits (383), Expect = 4e-39
 Identities = 82/195 (42%), Positives = 121/195 (62%), Gaps = 4/195 (2%)
 Frame = +3

Query: 54  ENEATIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDD 233
           E  + ++ VQ +GLAV+KI+KHC E + +   +  G LLGL V + LE+TNCFPFP  +D
Sbjct: 27  EAPSPLRVVQMEGLAVLKIIKHCEEFAPA---LVTGQLLGLDVGSVLEVTNCFPFPMRED 83

Query: 234 T----MDEEEYQLDMMRRLRRVNVDHFHVGWYQSADVGNFLSLSLLESQYHYQTSIEESV 401
                 D   YQL+MMR LR VNVD+  VGWYQS  +G+F ++ L+E+  +YQ +I   V
Sbjct: 84  DEEADADGANYQLEMMRCLREVNVDNNTVGWYQSCLLGSFQTVELIETFMNYQENIRRCV 143

Query: 402 VVIYDTKKSARGFLTLKAYRLTPQAIAMYKEGDYTPEALRNLKIGYENLFIEVPIVIRNS 581
            ++YD  +S +G L LKA +LT   + +Y+    T E LR  K+ + ++F E+PI + NS
Sbjct: 144 CIVYDPSRSNQGVLALKALKLTDSFMDLYRNNGLTGEKLREKKLSWVDIFEEIPIKVSNS 203

Query: 582 PLTNIMISELTEMIP 626
            L +  ++EL    P
Sbjct: 204 ALVSAFMTELEPESP 218


>04_04_1468 +
           33811471-33811657,33811888-33811980,33812899-33813027,
           33813089-33813166,33813377-33813435,33813522-33813644,
           33814225-33814282,33814383-33814468,33814564-33814635
          Length = 294

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = +3

Query: 66  TIQYVQCDGLAVMKIVKHCHEESCSNMEVAQGALLGLVVENRLEITNCFPFPKHDDTMDE 245
           T++ V    L ++ IV H +  +    +   G LLG      +++TN +  P  +D  D 
Sbjct: 13  TLEKVVVHPLVLLSIVDHYNRVARDTRKRVVGVLLGTSSRGSVDVTNSYAVPFEEDDKDP 72

Query: 246 EEYQLD 263
             + LD
Sbjct: 73  RIWFLD 78


>02_03_0085 + 15063444-15063889,15064324-15065311
          Length = 477

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/75 (33%), Positives = 34/75 (45%)
 Frame = -2

Query: 276 ASSSCPTGIPPHPWCRRALEMGSSW*SPDGSQRPNQGELPEPPPCCCMILHDSVSLFSSL 97
           +SS  PT  P H W RR    G     P  S     G   E    C +I+  +V+L  +L
Sbjct: 31  SSSRLPTTTPLHHWPRRRRSRGLP-PPPPPSPHSTAGPAGE---FCKIIIVPTVAL--AL 84

Query: 96  PVHRTEHIGSSLHFQ 52
           P HR  H G+++  Q
Sbjct: 85  PSHRIAHHGTAIEQQ 99


>07_01_0662 +
           4972953-4973645,4973758-4974046,4974790-4974803,
           4974848-4974856
          Length = 334

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 195 PDGSQRPNQGELPEPPPCCCMILHDSVSLFSSLPVHRTEHIGSSLHF 55
           P G   P QG +  PPP   +   +S   F SLP+H+ +  G ++H+
Sbjct: 207 PPGYIEPPQGYIEPPPPEPTLARIESTESF-SLPLHKVD--GRAIHY 250


>11_06_0110 + 20212221-20214011,20214072-20214368
          Length = 695

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
 Frame = +3

Query: 330 VGNFLSLSLLESQYHYQTSIEESVVVIYDTKKSARGFLTLKA-YRLTPQAIAMYKEG--D 500
           +GN LSL +L+  Y+   S + ++ ++    K+      L   YRL    I+   E    
Sbjct: 296 LGNMLSLQVLDFSYNMSVSKKGNMCIMKANLKNLCNLEVLDLDYRLAYGEISEIFESLPQ 355

Query: 501 YTPEALRNLKIGYENLFIEVP-IVIRNSPLTNIMI--SELTEMIPEEEG 638
            +P  L+ L +   NL   +P +V R + L  + +  + +T  +P E G
Sbjct: 356 CSPNKLKELHLANNNLTGNLPKLVGRLTSLVTLDLFNNNITGQVPSEIG 404


>07_01_0213 -
           1573315-1573485,1573583-1573765,1573858-1574046,
           1574182-1574263,1574315-1574421,1575086-1575161,
           1575457-1575637,1575711-1575828
          Length = 368

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = +3

Query: 306 VGWYQSADVGNFLSLSLLESQYH--YQTSIEESVVVIYDTKKSARGFLTLKAYR 461
           VGWY+S + G +   S  +S +H  ++     +++V  D  KSA G  T+ A+R
Sbjct: 166 VGWYRS-NPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKSATGNFTMNAFR 218


>12_02_0228 +
           15903452-15903812,15904153-15904202,15904615-15904713,
           15907146-15907415,15908045-15908125,15909033-15909599,
           15909677-15910053,15910326-15911613
          Length = 1030

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 146 GGGSGSSPWFGR*EPSGDYQLLP 214
           GGG GS  WF R   SG   LLP
Sbjct: 47  GGGGGSGGWFSRLVASGASLLLP 69


>05_01_0240 - 1791138-1791470
          Length = 110

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
 Frame = +1

Query: 124 MKNHA-ATWRW-----LRELSLVWSLRTVWRL 201
           M+ HA   WRW     LR   L W  R VWRL
Sbjct: 24  MQQHADGQWRWRPGLCLRRFRLRWLRRAVWRL 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,505,838
Number of Sequences: 37544
Number of extensions: 442460
Number of successful extensions: 1199
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)