Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20o20
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0420 - 18920511-18920717,18920968-18921209,18921786-189219...   133   9e-32
10_07_0069 - 12576197-12576290,12576658-12576851,12577671-125777...    62   4e-10
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522...    57   1e-08
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124...    52   4e-07
11_01_0728 + 6023361-6023495,6024880-6025212,6025306-6025361,602...    29   2.3  
03_06_0311 + 33054022-33054118,33056109-33056353,33057058-330573...    27   9.2  
01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604     27   9.2  

>12_02_0420 -
           18920511-18920717,18920968-18921209,18921786-18921927,
           18922012-18922164,18922845-18923243
          Length = 380

 Score =  133 bits (322), Expect = 9e-32
 Identities = 68/186 (36%), Positives = 110/186 (59%), Gaps = 1/186 (0%)
 Frame = +3

Query: 72  REEEDVSAGVAAIKTLLTVIENYKVSTVRELDLNLQLAVDAMRHCDQPVTAISSGCELFM 251
           R + + +  VAAI  L  VI + + +T+ EL++ L+ A D ++  D    ++S+ C+LFM
Sbjct: 91  RRKPEAAEAVAAIMALAAVIRSSRATTMMELEIELKKASDKLKSWDATSISLSAACDLFM 150

Query: 252 RFIT-FAKLDTKSFEECEKIMLQRGNIFLDKLLEARGKVAKQALSFICDGCKILTHSRSR 428
           RF+T  + L+ + F+  +  +++RG  F +  L+AR  +A  +  FI DGC IL H  SR
Sbjct: 151 RFVTRTSHLEHEKFDAAKSRLIERGEKFGEISLKARKTIAMLSQDFISDGCTILVHGYSR 210

Query: 429 VVLQAMIEAIKANKRFEVFITVSAPDNSGEMMHKQLVAAGVDATLILDSAVGYVMEQVDI 608
           VVL+ +  A    K F V  T   PD +G  M  +L A G+   +++DSAV Y M++VD+
Sbjct: 211 VVLEVLKLAASNRKLFRVLCTEGRPDRTGLRMSNELAALGIPVKVLIDSAVAYSMDEVDM 270

Query: 609 VMIGAE 626
           V +GA+
Sbjct: 271 VFVGAD 276


>10_07_0069 -
           12576197-12576290,12576658-12576851,12577671-12577796,
           12577879-12577981,12578085-12578192,12579343-12579472,
           12579685-12579966,12581046-12581200,12581306-12581358
          Length = 414

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 33/97 (34%), Positives = 57/97 (58%)
 Frame = +3

Query: 333 LDKLLEARGKVAKQALSFICDGCKILTHSRSRVVLQAMIEAIKANKRFEVFITVSAPDNS 512
           +D++     ++++QA+  I     ILT  RSR V + +  A +  + F VF+   AP   
Sbjct: 186 IDEIDTCYDQISEQAVEHIHQNEVILTLGRSRTVKEFLYAAKEKKRSFRVFVAEGAPRYK 245

Query: 513 GEMMHKQLVAAGVDATLILDSAVGYVMEQVDIVMIGA 623
           G ++ K+LV  GV  T+I DSAV  ++ +V++V++GA
Sbjct: 246 GHVLAKELVEKGVQTTVITDSAVFAMISRVNMVIVGA 282


>12_02_1123 -
           26250300-26250362,26251988-26252042,26252128-26252224,
           26252364-26253048,26253354-26253721,26253931-26254074,
           26254925-26255276
          Length = 587

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 5/180 (2%)
 Frame = +3

Query: 99  VAAIKTLLTVIENYKVSTVREL--DLNLQLA--VDAMRHCDQPVTAISSGCELFMRFITF 266
           VA +      I++Y   + + L  DL  +++  V  +  C +P++        F++    
Sbjct: 306 VAMLLAFREAIKDYSTPSTKTLNRDLTAKISSYVSFLIEC-KPLSISMGNAIRFLKNRIA 364

Query: 267 AKLDTKSFEECEKIMLQRGNIFL-DKLLEARGKVAKQALSFICDGCKILTHSRSRVVLQA 443
             L T S  E +  +    + F+ +K++ A   +   A++ + D   +LT++ S VV   
Sbjct: 365 KLLLTLSESEAKASLQSDIDRFINEKIIIADHVIVSHAIAKVRDDDVLLTYASSSVVEMI 424

Query: 444 MIEAIKANKRFEVFITVSAPDNSGEMMHKQLVAAGVDATLILDSAVGYVMEQVDIVMIGA 623
              A +  K+F V +  S P+N G+ +  +LVA G+  T    +A+ Y+M +V  V +GA
Sbjct: 425 FDHANELGKKFRVVVVDSRPNNEGQALLHRLVAKGISCTYTHINAISYIMHEVTRVFLGA 484


>03_05_0478 -
           24712157-24712177,24712206-24712260,24712377-24712473,
           24712558-24713302,24713822-24714189,24714279-24714419,
           24715480-24715849
          Length = 598

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 2/163 (1%)
 Frame = +3

Query: 141 KVSTVRELDLNLQLAVDAMRHCDQPVTAISSGCELFMRFITFAKLDTKSFEECEKIMLQR 320
           K +  R+L   +   V  +  C +P++ IS G  +       AKL     E   K  LQ 
Sbjct: 329 KKTLSRDLTAKISSYVSFLIEC-RPLS-ISMGNAIRFLKNRIAKLPLTLSESEAKASLQS 386

Query: 321 G--NIFLDKLLEARGKVAKQALSFICDGCKILTHSRSRVVLQAMIEAIKANKRFEVFITV 494
                  +K++ A   +   A++ + D   +LT+  S VV   +  A +  ++F V +  
Sbjct: 387 DIDRFINEKIVVADKVIVSHAITKVRDNDVLLTYGSSSVVEMILDHAHELGRKFRVIVVD 446

Query: 495 SAPDNSGEMMHKQLVAAGVDATLILDSAVGYVMEQVDIVMIGA 623
           S P   G+ + ++LV  G++ T    +A+ Y+M +V  V +GA
Sbjct: 447 SRPKLEGQGLLRRLVEKGINCTYTHINAISYIMHEVTRVFLGA 489


>11_01_0728 +
           6023361-6023495,6024880-6025212,6025306-6025361,
           6025526-6025684,6025790-6025889,6026481-6026623,
           6026728-6026833,6027139-6027277,6027363-6027631,
           6027734-6027820
          Length = 508

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +3

Query: 477 EVFITVSAPDNSGEMMHK-QLVAAGVDATLILDSAVGYVMEQ--VDIVMIGAE 626
           + F T + P N G  +   +LV   V ATLI DSA   +M+   +  V++GA+
Sbjct: 333 KAFCTETRPFNQGSRLTAFELVHDKVPATLIADSAAAALMKSGCIQAVIVGAD 385


>03_06_0311 +
           33054022-33054118,33056109-33056353,33057058-33057398,
           33057488-33057538,33057623-33057695,33058229-33058333,
           33060124-33060206,33061209-33061249,33061659-33063120,
           33063368-33064847,33064958-33065122,33065232-33065424,
           33065502-33065613,33065702-33065849,33065951-33066148,
           33066234-33066512,33066612-33066773,33066872-33067090,
           33067481-33067612
          Length = 1861

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = +3

Query: 432 VLQAMIEAIKANKRFEVFITVSAPDNSGEMMHKQLVAAGVDAT 560
           ++  ++ +I +N+ F   +T     +SGE ++KQL+  G+D T
Sbjct: 568 LIAGVVRSINSNRSFNGTVTKDFVISSGEFIYKQLI--GLDHT 608


>01_06_1769 - 39774042-39774566,39775448-39775498,39776371-39776604
          Length = 269

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 80  FFSQDLHEYSLYFFFF-HVLNLV 15
           FF + L +Y LYF+ F H+LN V
Sbjct: 74  FFFKSLLKYDLYFYIFVHILNKV 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,438
Number of Sequences: 37544
Number of extensions: 285261
Number of successful extensions: 721
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)