Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20o17
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.5  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   7.7  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   7.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 415 MITALVLEGIIKKILLSCSPLGQYKLTFMLN 507
           ++TAL+  G +KK  L  S +   K+  M N
Sbjct: 336 LVTALIQRGTLKKGCLLVSGIASAKVRSMFN 366


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -3

Query: 214 TSTLRRWDLW*RAHKQSCKCGTFCLCAKPLKPK 116
           T  + RW  W     + CK  T    ++ ++PK
Sbjct: 382 TDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPK 414


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -3

Query: 214 TSTLRRWDLW*RAHKQSCKCGTFCLCAKPLKPK 116
           T  + RW  W     + CK  T    ++ ++PK
Sbjct: 382 TDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPK 414


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -3

Query: 214 TSTLRRWDLW*RAHKQSCKCGTFCLCAKPLKPK 116
           T  + RW  W     + CK  T    ++ ++PK
Sbjct: 382 TDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPK 414


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = -1

Query: 630 SNDARDGVGALVYDALKLICVIVVWLFTIVSPPMSTCN*NNIQHERQFILP 478
           S D  + V  ++Y  L  +  +  +L T V+P +     N  +   + +LP
Sbjct: 314 SKDKPEDVLIIIYTILTYMSGVFYYLSTTVNPLLYNIMSNKFREAFKLMLP 364


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 161 QVWHILSVRKTFEAKSTRSVTGMLAHTDNGPDKF 60
           Q WH L V  T E  +  +V G     +   D F
Sbjct: 154 QTWHDLRVALTSELTAASTVLGFFPALNIVADSF 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,578
Number of Sequences: 438
Number of extensions: 3363
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)