Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20o12
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 163 3e-41
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 28 1.00
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe... 27 1.7
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 2.3
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 26 5.3
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 26 5.3
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom... 25 7.0
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 25 9.3
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 25 9.3
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 163 bits (395), Expect = 3e-41
Identities = 76/170 (44%), Positives = 106/170 (62%)
Frame = +3
Query: 120 KVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDIK 299
K+K P +DE+ PV+ +Q+VLV + RG+ +R RHL+ D+
Sbjct: 6 KLKTSERAPKNEDEDEEYVPVQNGQGNKHSAGFVPIKQKVLVLSSRGVTYRQRHLLNDLV 65
Query: 300 KLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMRDLYMWISNIPNGPSAKFL 479
+MPH K +SK++ LY +NE++E+ NCN FE R+ DLY+ I+ PNGP+ KF
Sbjct: 66 SMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPTVKFH 125
Query: 480 VENIYTMGELKMTGNCLRGSRPLLSFDPQFTKDPHYCLLKELLVQIFGVP 629
VEN++TM EL MTGN L+GSRP+LSFD F PH ++KELL Q FG+P
Sbjct: 126 VENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIP 175
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 28.3 bits (60), Expect = 1.00
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -2
Query: 457 LGILDIHIYKSLIFLPSNKMHLLQFFISLISLTTYKFLLL 338
+GIL +YK + L + +M L FF S++ + T+ +++
Sbjct: 133 MGILPFTMYKYTVILTALEMPLAIFFCSIVCVCTFSPIMI 172
>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 399 ILFEGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTG 521
+L E RK + + + ++PNGPS F + N+ T E+ G
Sbjct: 150 VLNEDRKKTNA-LTLVHLPNGPSFYFTLSNLQTAKEISNHG 189
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +3
Query: 186 MSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKN 350
M + P+P +K N++R L ++ N R +++KK+ ++S + KN
Sbjct: 566 MEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSKEVKKVPARKLSQSTKKSDKN 620
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.8 bits (54), Expect = 5.3
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 2/89 (2%)
Frame = +3
Query: 375 EMKNCNKCILFEGRKMRDLYMWISNIPNGPSAKFLVENIY-TMGELKMTGNCLRGSRPLL 551
++++ K +LFE Y + I + P N+Y EL + N R ++
Sbjct: 224 QIQSLMKSLLFEYHHENVNY--VPTIADAPLTDEQKLNLYLARNELIVLANHFRDTKE-- 279
Query: 552 SFDPQFTKDPHYC-LLKELLVQIFGVPNY 635
DP +P L + L+ FGVPNY
Sbjct: 280 --DPAIVANPFPVRLARPALINAFGVPNY 306
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 5.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 516 TGNCLRGSRPLLSFDPQFTKDPHYCLLKE 602
T +CL G L + DPH+CLL+E
Sbjct: 197 TRHCLYGLDADLIMLGLLSHDPHFCLLRE 225
>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1466
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 84 KFKAMVKVK-KPSKVKQRITEPVTKDENVPLPPVRMSSD 197
K K +V V KPS V ++ T DEN P+ V + D
Sbjct: 1170 KSKVVVDVSTKPSGVGHQVLLLTTDDENAPISSVLIDFD 1208
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 512 FQFPHSINVFHQKFSTWSIGYIRYPHI 432
F P+SIN H F S+GY YP I
Sbjct: 544 FNPPNSINSNHYSFDDGSLGY--YPSI 568
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +3
Query: 177 PVRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDIK 299
P D +P++++W Q M+ R + LM+D++
Sbjct: 93 PSIYEGDVSPEELRWWAYQAKATNNMQAYEQRQKQLMDDVE 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,153
Number of Sequences: 5004
Number of extensions: 58937
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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