Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20o12
         (641 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    26   0.88 
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    25   1.5  
U50474-1|AAA93476.1|   62|Anopheles gambiae protein ( Anopheles ...    24   4.7  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    23   6.2  
AY176051-1|AAO19582.1|  522|Anopheles gambiae cytochrome P450 CY...    23   8.2  
AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP prot...    23   8.2  

>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 26.2 bits (55), Expect = 0.88
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 490 MFSTKNLALGPLGILDIHIYKSLIFLPSNKMHLLQFFIS-LISLTTYKFLLLSIL 329
           +F T NL +  +GI  + +   + +LPS+    +   IS L+SLT +  LL  I+
Sbjct: 240 LFYTVNLIIPCVGISFLSVL--VFYLPSDSGEKISLCISILLSLTVFFLLLAEII 292


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 490 MFSTKNLALGPLGILDIHIYKSLIFLPSNKMHLLQFFISLISLTTYKFLLLS 335
           +F T NL +  +GI  + I   + +LPS+    +   IS++   T  FLLL+
Sbjct: 240 LFYTVNLIIPCMGISFLTIL--VFYLPSDSGEKVSLSISILLSLTVFFLLLA 289


>U50474-1|AAA93476.1|   62|Anopheles gambiae protein ( Anopheles
           gambiae putativetrypsin-like enzyme precursor, mRNA,
           partial cds. ).
          Length = 62

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 132 RITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLV 245
           R+  P+T    +   P+R+        V+WI+R RV +
Sbjct: 14  RLNSPITFTARIQ--PIRLPGPLGYPPVRWIHRYRVRI 49


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 174 PPVRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMEDIKKL-MPHHKTESKMERSK 347
           PP+ +      +Q        +++ +  G +H H  L+E+   L M HH+ + + ++ +
Sbjct: 690 PPIELHELQQQQQQNGGPTATIMMISTAGPHHPHDLLIEENNMLNMTHHQHQHQQQQQQ 748


>AY176051-1|AAO19582.1|  522|Anopheles gambiae cytochrome P450
           CYP12F1 protein.
          Length = 522

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 282 LMEDIKKLMPHHKTESKMERSKNL 353
           L ++++ ++PHH +    E  +NL
Sbjct: 350 LRKELRSILPHHDSPLTPENMRNL 373


>AJ439060-4|CAD27755.1|  151|Anopheles gambiae putative sRNP
           protein.
          Length = 151

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 144 PVTKDENVPLPPVRMSSDPAPKQV 215
           P+    N PLPP  M   P P  V
Sbjct: 100 PLLMGPNGPLPPPMMGMRPPPMMV 123


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 666,799
Number of Sequences: 2352
Number of extensions: 13666
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63141405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)