Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20o12
         (641 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036741-1|AAH36741.1|  353|Homo sapiens brix domain containing ...   229   5e-60
BC006014-1|AAH06014.1|  335|Homo sapiens Unknown (protein for IM...   229   5e-60
BC001546-1|AAH01546.2|  353|Homo sapiens brix domain containing ...   229   5e-60
AY364244-1|AAQ76803.1|  353|Homo sapiens BRIX protein.                229   5e-60
AF347667-1|AAL83818.1|  354|Homo sapiens BRIX protein.                228   1e-59
AY364243-1|AAQ76802.1|  129|Homo sapiens BRIX protein.                117   3e-26
AK001962-1|BAA92003.1|  129|Homo sapiens protein ( Homo sapiens ...   117   3e-26
BX538061-1|CAD97992.1|  311|Homo sapiens hypothetical protein pr...    33   0.86 
BC034033-1|AAH34033.1|  409|Homo sapiens chromosome 9 open readi...    33   0.86 
AL158825-4|CAI12577.1|  409|Homo sapiens chromosome 9 open readi...    33   0.86 
AK098661-1|BAC05369.1|  277|Homo sapiens protein ( Homo sapiens ...    33   0.86 
BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio...    31   4.6  
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ...    31   4.6  
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio...    31   4.6  

>BC036741-1|AAH36741.1|  353|Homo sapiens brix domain containing 2
           protein.
          Length = 353

 Score =  229 bits (561), Expect = 5e-60
 Identities = 105/184 (57%), Positives = 132/184 (71%), Gaps = 3/184 (1%)
 Frame = +3

Query: 99  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQV---KWINRQRVLVFAMRGINH 269
           V+ KKP +  +   EP  K             D  P  V   KW N++R+L+F+ RGIN 
Sbjct: 14  VQAKKPKR-NEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIFSSRGINF 72

Query: 270 RHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMRDLYMWISN 449
           R RHLM+D++ LMPH K ++KM+R   L+V+NE+ EMKNCNKCI FE +K +DLYMW+SN
Sbjct: 73  RTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSN 132

Query: 450 IPNGPSAKFLVENIYTMGELKMTGNCLRGSRPLLSFDPQFTKDPHYCLLKELLVQIFGVP 629
            P+GPSAKFLV+NI+T+ ELKMTGNCL+GSRPLLSFDP F + PHY LLKELL+QIF  P
Sbjct: 133 SPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTP 192

Query: 630 NYHP 641
            YHP
Sbjct: 193 RYHP 196


>BC006014-1|AAH06014.1|  335|Homo sapiens Unknown (protein for
           IMAGE:3683425) protein.
          Length = 335

 Score =  229 bits (561), Expect = 5e-60
 Identities = 105/184 (57%), Positives = 132/184 (71%), Gaps = 3/184 (1%)
 Frame = +3

Query: 99  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQV---KWINRQRVLVFAMRGINH 269
           V+ KKP +  +   EP  K             D  P  V   KW N++R+L+F+ RGIN 
Sbjct: 14  VQAKKPKR-NEIDAEPPAKRHATAEEVKEEERDRIPGPVCKGKWKNKERILIFSSRGINF 72

Query: 270 RHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMRDLYMWISN 449
           R RHLM+D++ LMPH K ++KM+R   L+V+NE+ EMKNCNKCI FE +K +DLYMW+SN
Sbjct: 73  RTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSN 132

Query: 450 IPNGPSAKFLVENIYTMGELKMTGNCLRGSRPLLSFDPQFTKDPHYCLLKELLVQIFGVP 629
            P+GPSAKFLV+NI+T+ ELKMTGNCL+GSRPLLSFDP F + PHY LLKELL+QIF  P
Sbjct: 133 SPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTP 192

Query: 630 NYHP 641
            YHP
Sbjct: 193 RYHP 196


>BC001546-1|AAH01546.2|  353|Homo sapiens brix domain containing 2
           protein.
          Length = 353

 Score =  229 bits (561), Expect = 5e-60
 Identities = 105/184 (57%), Positives = 132/184 (71%), Gaps = 3/184 (1%)
 Frame = +3

Query: 99  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQV---KWINRQRVLVFAMRGINH 269
           V+ KKP +  +   EP  K             D  P  V   KW N++R+L+F+ RGIN 
Sbjct: 14  VQAKKPKR-NEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIFSSRGINF 72

Query: 270 RHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMRDLYMWISN 449
           R RHLM+D++ LMPH K ++KM+R   L+V+NE+ EMKNCNKCI FE +K +DLYMW+SN
Sbjct: 73  RTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSN 132

Query: 450 IPNGPSAKFLVENIYTMGELKMTGNCLRGSRPLLSFDPQFTKDPHYCLLKELLVQIFGVP 629
            P+GPSAKFLV+NI+T+ ELKMTGNCL+GSRPLLSFDP F + PHY LLKELL+QIF  P
Sbjct: 133 SPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTP 192

Query: 630 NYHP 641
            YHP
Sbjct: 193 RYHP 196


>AY364244-1|AAQ76803.1|  353|Homo sapiens BRIX protein.
          Length = 353

 Score =  229 bits (561), Expect = 5e-60
 Identities = 105/184 (57%), Positives = 132/184 (71%), Gaps = 3/184 (1%)
 Frame = +3

Query: 99  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQV---KWINRQRVLVFAMRGINH 269
           V+ KKP +  +   EP  K             D  P  V   KW N++R+L+F+ RGIN 
Sbjct: 14  VQAKKPKR-NEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIFSSRGINF 72

Query: 270 RHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMRDLYMWISN 449
           R RHLM+D++ LMPH K ++KM+R   L+V+NE+ EMKNCNKCI FE +K +DLYMW+SN
Sbjct: 73  RTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMWLSN 132

Query: 450 IPNGPSAKFLVENIYTMGELKMTGNCLRGSRPLLSFDPQFTKDPHYCLLKELLVQIFGVP 629
            P+GPSAKFLV+NI+T+ ELKMTGNCL+GSRPLLSFDP F + PHY LLKELL+QIF  P
Sbjct: 133 SPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDELPHYALLKELLIQIFSTP 192

Query: 630 NYHP 641
            YHP
Sbjct: 193 RYHP 196


>AF347667-1|AAL83818.1|  354|Homo sapiens BRIX protein.
          Length = 354

 Score =  228 bits (557), Expect = 1e-59
 Identities = 95/142 (66%), Positives = 119/142 (83%)
 Frame = +3

Query: 216 KWINRQRVLVFAMRGINHRHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNK 395
           KW N++R+L+F+ RGIN R RHLM+D++ LMPH K ++KM+R   L+V+NE+ EMKNCNK
Sbjct: 55  KWKNKERILIFSSRGINFRTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNK 114

Query: 396 CILFEGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTGNCLRGSRPLLSFDPQFTK 575
           CI FE +K +DLYMW+SN P+GPSAKFLV+NI+T+ ELKMTGNCL+GSRPLLSFDP F +
Sbjct: 115 CIYFEAKKKQDLYMWLSNSPHGPSAKFLVQNIHTLAELKMTGNCLKGSRPLLSFDPAFDE 174

Query: 576 DPHYCLLKELLVQIFGVPNYHP 641
            PHY LLKELL+QIF  P YHP
Sbjct: 175 LPHYALLKELLIQIFSTPRYHP 196


>AY364243-1|AAQ76802.1|  129|Homo sapiens BRIX protein.
          Length = 129

 Score =  117 bits (282), Expect = 3e-26
 Identities = 55/117 (47%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
 Frame = +3

Query: 99  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQV---KWINRQRVLVFAMRGINH 269
           V+ KKP +  +   EP  K             D  P  V   KW N++R+L+F+ RGIN 
Sbjct: 14  VQAKKPKR-NEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIFSSRGINF 72

Query: 270 RHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMRDLYMW 440
           R RHLM+D++ LMPH K ++KM+R   L+V+NE+ EMKNCNKCI FE +K +DLYMW
Sbjct: 73  RTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMW 129


>AK001962-1|BAA92003.1|  129|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11100 fis, clone PLACE1005550. ).
          Length = 129

 Score =  117 bits (282), Expect = 3e-26
 Identities = 55/117 (47%), Positives = 74/117 (63%), Gaps = 3/117 (2%)
 Frame = +3

Query: 99  VKVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQV---KWINRQRVLVFAMRGINH 269
           V+ KKP +  +   EP  K             D  P  V   KW N++R+L+F+ RGIN 
Sbjct: 14  VQAKKPKR-NEIDAEPPAKRHATAEEVEEEERDRIPGPVCKGKWKNKERILIFSSRGINF 72

Query: 270 RHRHLMEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMRDLYMW 440
           R RHLM+D++ LMPH K ++KM+R   L+V+NE+ EMKNCNKCI FE +K +DLYMW
Sbjct: 73  RTRHLMQDLRMLMPHSKADTKMDRKDKLFVINEVCEMKNCNKCIYFEAKKKQDLYMW 129


>BX538061-1|CAD97992.1|  311|Homo sapiens hypothetical protein
           protein.
          Length = 311

 Score = 33.1 bits (72), Expect = 0.86
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +3

Query: 219 WINRQRVLVFAMRGINHRHRHLM-EDIKKLMPHH--KTESKMERSKNLYVVNEISEMKNC 389
           WIN   +L       N     L  EDIK ++  +  K E + E   + Y VN++S MK  
Sbjct: 240 WINLGPLLYHFENLANELSIELSYEDIKNVVLQYGFKVEVEKESVLSTYTVNDLSMMKYY 299

Query: 390 NKCILFEGRK 419
            +C+LF  RK
Sbjct: 300 YECVLFVVRK 309


>BC034033-1|AAH34033.1|  409|Homo sapiens chromosome 9 open reading
           frame 41 protein.
          Length = 409

 Score = 33.1 bits (72), Expect = 0.86
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +3

Query: 219 WINRQRVLVFAMRGINHRHRHLM-EDIKKLMPHH--KTESKMERSKNLYVVNEISEMKNC 389
           WIN   +L       N     L  EDIK ++  +  K E + E   + Y VN++S MK  
Sbjct: 338 WINLGPLLYHFENLANELSIELSYEDIKNVVLQYGFKVEVEKESVLSTYTVNDLSMMKYY 397

Query: 390 NKCILFEGRK 419
            +C+LF  RK
Sbjct: 398 YECVLFVVRK 407


>AL158825-4|CAI12577.1|  409|Homo sapiens chromosome 9 open reading
           frame 41 protein.
          Length = 409

 Score = 33.1 bits (72), Expect = 0.86
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +3

Query: 219 WINRQRVLVFAMRGINHRHRHLM-EDIKKLMPHH--KTESKMERSKNLYVVNEISEMKNC 389
           WIN   +L       N     L  EDIK ++  +  K E + E   + Y VN++S MK  
Sbjct: 338 WINLGPLLYHFENLANELSIELSYEDIKNVVLQYGFKVEVEKESVLSTYTVNDLSMMKYY 397

Query: 390 NKCILFEGRK 419
            +C+LF  RK
Sbjct: 398 YECVLFVVRK 407


>AK098661-1|BAC05369.1|  277|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25795 fis, clone TST07031. ).
          Length = 277

 Score = 33.1 bits (72), Expect = 0.86
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +3

Query: 219 WINRQRVLVFAMRGINHRHRHLM-EDIKKLMPHH--KTESKMERSKNLYVVNEISEMKNC 389
           WIN   +L       N     L  EDIK ++  +  K E + E   + Y VN++S MK  
Sbjct: 206 WINLGPLLYHFENLANELSIELSYEDIKNVVLQYGFKVEVEKESVLSTYTVNDLSMMKYY 265

Query: 390 NKCILFEGRK 419
            +C+LF  RK
Sbjct: 266 YECVLFVVRK 275


>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
           regulator 1 protein.
          Length = 1077

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 102 KVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQ 233
           ++K+  K++++I EP+ +    PLP      DP  + +K I  +
Sbjct: 441 ELKEKEKLEEKIKEPIKEPSEEPLPMETEEEDPKEEPIKEIKEE 484


>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
           factor CA150 protein.
          Length = 1098

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 102 KVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQ 233
           ++K+  K++++I EP+ +    PLP      DP  + +K I  +
Sbjct: 462 ELKEKEKLEEKIKEPIKEPSEEPLPMETEEEDPKEEPIKEIKEE 505


>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
           regulator 1 variant protein.
          Length = 1081

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 102 KVKKPSKVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQ 233
           ++K+  K++++I EP+ +    PLP      DP  + +K I  +
Sbjct: 445 ELKEKEKLEEKIKEPIKEPSEEPLPMETEEEDPKEEPIKEIKEE 488


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,088,133
Number of Sequences: 237096
Number of extensions: 1974045
Number of successful extensions: 3563
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3563
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)