Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20o12
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.62 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.62 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.8  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.7  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -2

Query: 490 MFSTKNLALGPLGILDIHIYKSLIFLPSNKMHLLQFFISLISLTTYKFLLLS 335
           +F T NL +  +GI  + +   + +LPS+    +   IS++   T  FLLL+
Sbjct: 241 LFYTVNLIIPCMGISFLTVL--VFYLPSDSGEKVSLSISILLSLTVFFLLLA 290


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -2

Query: 490 MFSTKNLALGPLGILDIHIYKSLIFLPSNKMHLLQFFISLISLTTYKFLLLS 335
           +F T NL +  +GI  + +   + +LPS+    +   IS++   T  FLLL+
Sbjct: 237 LFYTVNLIIPCVGISFLSVL--VFYLPSDSGEKVSLSISILLSLTVFFLLLA 286


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 531 RGSRPLLSFDPQFTKDPHYCLLKE 602
           R  RP  +F+P+ T   HY   KE
Sbjct: 158 RYKRPRTTFEPRATDSRHYDRYKE 181


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 521 ASHFQFPHSINVFHQKFSTWS 459
           A H + P++   FH K   W+
Sbjct: 788 AGHVRLPYTFEQFHNKELLWT 808


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -1

Query: 521 ASHFQFPHSINVFHQKFSTWS 459
           A H + P++   FH K   W+
Sbjct: 826 AGHVRLPYTFEQFHNKELLWT 846


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 218  MDKQTEGTRLCDERYQSSSQAFNG 289
            + K T    LC  RYQ    A+NG
Sbjct: 1419 VQKYTLENLLCGSRYQIYVTAYNG 1442


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +3

Query: 438 WISNIPNGPSAKFLVEN 488
           W++N+PNG    ++  N
Sbjct: 336 WVANVPNGSVTNWVSGN 352


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 204 PKQVKWINRQR 236
           P+ +KW NR+R
Sbjct: 475 PRYIKWTNRER 485


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 276 RHLMEDIKKLMPHHKTESKME 338
           R ++EDIK +   H T++ M+
Sbjct: 215 RIILEDIKHINTRHNTKNGMK 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,507
Number of Sequences: 438
Number of extensions: 3736
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)