Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20o07
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    29   0.46 
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   3.3  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    26   4.3  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    26   5.7  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    25   7.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.6  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   7.6  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   10.0 

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -2

Query: 232 KLGHNRDYNIALGVYLQAYSLFNRYFTNVEKITPFANTQIRGNTLFIQYD 83
           KL +  +Y I+L +Y +A    N  +TN E +T       RGN+  I+YD
Sbjct: 653 KLANAINYLISLILYPKAR---NESWTNTESLTTGITVDERGNSKLIEYD 699


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 299 ASWNTGCPGWWRHSS 255
           A+W  G PGW+ H++
Sbjct: 216 AAWEAGLPGWYSHNA 230


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 478 PQLQRPPFETPLVLLETHIAESLKQSQPNTEQKTPVSEDGVC*WL 612
           PQ Q   F +P++ ++    E      P +E   PV+E     WL
Sbjct: 163 PQFQVRQFVSPIISIDNSALEPFLNRYPASESLFPVTEYEYTPWL 207


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 227 KLLTQMTMKKMNVATIQDIQYSTMLTRAGHVVIRKVL 337
           KLL  + +K  N   + D+Q + +    GH+   K++
Sbjct: 221 KLLNNLRIKNTNTNEVSDLQVNGLFYAIGHIPATKLV 257


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = -2

Query: 193 VYLQAYSLFNRYFTNVEKITPFA 125
           +YL+AYS+  +YF++ + +   A
Sbjct: 488 IYLKAYSIIEKYFSDEDAVEDLA 510


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 279  SWMVATFIFFIVIWVKSLATTAIITLH*VF 190
            S ++   IFFIV+W   L+   I++L+ V+
Sbjct: 2179 SIIILLLIFFIVVWAVLLSVIKILSLNNVW 2208


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 636 FAEYTHPQQPLTDAIFRDWSFLL 568
           FA  THPQQ L  +   D+ FL+
Sbjct: 595 FASPTHPQQALKSSSSNDFYFLM 617


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 478 PQLQRPPFETPLVLLETHIAESLKQSQPNTEQKTPVS 588
           P+   P   +P V  E H +ES+  ++P+T +K P S
Sbjct: 421 PRKPLPTTTSPKVNPEPH-SESISDTRPSTPRKVPPS 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,774
Number of Sequences: 5004
Number of extensions: 64881
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)