Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20o07
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1345 - 26286448-26286679,26287483-26288038,26288068-262883...    28   5.9  
09_06_0302 - 22144271-22144543,22144946-22145083,22146004-221462...    28   7.8  
01_01_1060 - 8363272-8365912,8366375-8366443,8366479-8366843,836...    28   7.8  

>08_02_1345 -
           26286448-26286679,26287483-26288038,26288068-26288358,
           26288953-26290516
          Length = 880

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 90  NMIGLKLENKYVSCMYVCSNKF 25
           +++GL   N YV+C ++CS  F
Sbjct: 245 HLVGLVYHNPYVACCFLCSETF 266


>09_06_0302 -
           22144271-22144543,22144946-22145083,22146004-22146278,
           22146486-22146957
          Length = 385

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 211 NRGCGQAFDPNDNEKDECRHHPGHPVF 291
           NRG    + P +N+K +CR  P  P F
Sbjct: 228 NRGNPPYYPPYENQKQKCRFDPRKPPF 254


>01_01_1060 -
           8363272-8365912,8366375-8366443,8366479-8366843,
           8367403-8367550,8367630-8367873,8368105-8368407,
           8368639-8368851,8368927-8369002,8369533-8369561,
           8369610-8369984,8371784-8371927,8374053-8374086
          Length = 1546

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/53 (18%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = -2

Query: 667 PTWTDAPEEAICRVHT----SSTTTNRRHLQRLEFFALYLAEIVSMIQLCVFL 521
           PT+T +P+ +  +  T    S+ T+N +H+  +    +++  +++++ + +F+
Sbjct: 221 PTFTISPKPSPSQASTVPRHSADTSNEKHMSLITIICIFIGALIAVLVIAMFI 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,898,698
Number of Sequences: 37544
Number of extensions: 376365
Number of successful extensions: 838
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)