Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20o07
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD contain...   112   3e-25
AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein...   112   3e-25
AF047651-5|AAC02722.2|  702|Caenorhabditis elegans Germline-enha...    29   2.3  
U42832-2|AAA83572.1|  558|Caenorhabditis elegans Udp-glucuronosy...    29   4.0  
U28736-2|AAA68307.1|  620|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z81560-3|CAB04548.2|  328|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD containing
           protein protein.
          Length = 321

 Score =  112 bits (269), Expect = 3e-25
 Identities = 43/75 (57%), Positives = 56/75 (74%)
 Frame = +1

Query: 187 DKHLVQCYNRGCGQAFDPNDNEKDECRHHPGHPVFHDAYKGWSCCNKKSVDFTEFLNIKG 366
           D+  +QCY++GCG  FDP +N+ + C +HPG P FHDAYK W+CC+KKS DF  ++N KG
Sbjct: 3   DESKLQCYHKGCGLLFDPKENDNEACTYHPGGPYFHDAYKIWTCCDKKSTDFGTWMNYKG 62

Query: 367 CTLSKHSNVKPVEPV 411
           CT  KHSN KPV+ V
Sbjct: 63  CTRGKHSNEKPVDIV 77



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 30/60 (50%), Positives = 38/60 (63%)
 Frame = +1

Query: 205 CYNRGCGQAFDPNDNEKDECRHHPGHPVFHDAYKGWSCCNKKSVDFTEFLNIKGCTLSKH 384
           C N GC   FD + N K+ C+HHPG  +FH+  K WSCCNKK+ +F  FL   GCT  +H
Sbjct: 152 CRNNGCSTEFDGSKN-KENCQHHPGAAIFHEGMKYWSCCNKKTSNFGAFLEQVGCTSGEH 210


>AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein
           protein 1 protein.
          Length = 321

 Score =  112 bits (269), Expect = 3e-25
 Identities = 43/75 (57%), Positives = 56/75 (74%)
 Frame = +1

Query: 187 DKHLVQCYNRGCGQAFDPNDNEKDECRHHPGHPVFHDAYKGWSCCNKKSVDFTEFLNIKG 366
           D+  +QCY++GCG  FDP +N+ + C +HPG P FHDAYK W+CC+KKS DF  ++N KG
Sbjct: 3   DESKLQCYHKGCGLLFDPKENDNEACTYHPGGPYFHDAYKIWTCCDKKSTDFGTWMNYKG 62

Query: 367 CTLSKHSNVKPVEPV 411
           CT  KHSN KPV+ V
Sbjct: 63  CTRGKHSNEKPVDIV 77



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 30/60 (50%), Positives = 38/60 (63%)
 Frame = +1

Query: 205 CYNRGCGQAFDPNDNEKDECRHHPGHPVFHDAYKGWSCCNKKSVDFTEFLNIKGCTLSKH 384
           C N GC   FD + N K+ C+HHPG  +FH+  K WSCCNKK+ +F  FL   GCT  +H
Sbjct: 152 CRNNGCSTEFDGSKN-KENCQHHPGAAIFHEGMKYWSCCNKKTSNFGAFLEQVGCTSGEH 210


>AF047651-5|AAC02722.2|  702|Caenorhabditis elegans
           Germline-enhanced at-hook proteinprotein 1 protein.
          Length = 702

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 469 VAGPQLQRPP-FETPLVLLETHIAESLKQSQPNTEQKTP 582
           +  P++ RPP  +TP  L  T +   +K+ QP  EQ  P
Sbjct: 594 ITTPRILRPPTLKTPYSLPRTAVIPVMKKKQPEIEQVQP 632


>U42832-2|AAA83572.1|  558|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein57 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 586 RLEFFALYLAEIVSMIQLCVFLRAPEVFQRVVFVTVDQQLEL 461
           R+    L L +IV+ + + VFL     F+R +F  + QQL L
Sbjct: 2   RILILLLGLTQIVTSLNILVFLLGTNQFERNIFEFLAQQLAL 43


>U28736-2|AAA68307.1|  620|Caenorhabditis elegans Hypothetical
           protein F26A10.2 protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 184 EDKHLVQCYNRGCGQAFDPNDNEKDECRHHPGHPVFHDAYKGWSCCNK 327
           ED    +C N  C QAFD   N+K+  RH   H +    ++ + CC +
Sbjct: 292 EDLFPYKCSN--CRQAFD---NKKELMRHTQTHTMDGGIFRCFECCGQ 334


>Z81560-3|CAB04548.2|  328|Caenorhabditis elegans Hypothetical
           protein K02E2.3 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 625 HTSSTTTNRRHLQRLEFFALYLAEIVSMIQLCV 527
           H +S + N  HLQ+  FFA+    I+ +I L +
Sbjct: 222 HITSVSKNTAHLQKQFFFAICFHVIIPLIVLSI 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,127,281
Number of Sequences: 27780
Number of extensions: 361460
Number of successful extensions: 884
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)