Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20o07
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    28   0.094
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    24   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.1  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 0.094
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = -2

Query: 307 PCKHRGILDVLDGGDIH 257
           PC+HRG++ ++DG +++
Sbjct: 114 PCEHRGLVSIIDGWELN 130


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 206 HCTRCLSSGIFVIQ*IFYERRKNYPF 129
           HC RC S  I +   +    ++NYP+
Sbjct: 64  HCNRCTSRQIGIANTLIPFMQQNYPY 89


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 466 PVAGPQLQRPPFETPLVLLETHIAESLKQSQP 561
           P   PQ   PP E PLV ++ H   +    QP
Sbjct: 481 PTLLPQWCLPPREAPLVGVQPHQDSATPADQP 512


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 401  TGFTLLCLDKVHPFMFKNSVKSTLFLLQHDQP 306
            TG + L   +    +FK+S  +T  +LQH  P
Sbjct: 1239 TGVSTLRGQERQRSLFKDSSPATALMLQHAPP 1270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,947
Number of Sequences: 438
Number of extensions: 4770
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)