Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20o06
         (202 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    27   0.45 
SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr ...    25   1.4  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   1.8  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   1.8  
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    24   3.2  
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    23   4.2  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    23   4.2  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    23   5.5  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    23   7.3  
SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyc...    22   9.7  

>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 26.6 bits (56), Expect = 0.45
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 24  RKLMRIYLNTDTF-SGQLPAYLTHYVNYPHKNLCDQNWKRF 143
           +K+  I LN +T   G L AY+ + V  P+ N+ +  W+ F
Sbjct: 124 KKVFEIALNGNTILGGILVAYILYNVLSPNANMQEITWQDF 164


>SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 84  LTHYVNYPHKNLCDQNWKRFMSCI 155
           + HY  Y   N C  N+K F  C+
Sbjct: 53  MNHYYRYGEYNRCKGNFKDFKWCL 76


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 75  PAYLTHYVNYPHKNLCDQNWKRFMS--CIFSLY 167
           P   T++  +  KN CD+N +RF S  C F+ Y
Sbjct: 352 PNLQTYFFEFLKKNFCDEN-QRFYSEVCEFNDY 383


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 101 LSTQKFV*PKLEA-VYVMYFFVILIKQHNFL 190
           ++T  F+   L A +YV+YFF  LI++H+ L
Sbjct: 488 MATLAFISLSLVATIYVIYFFGHLIRKHSRL 518


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +3

Query: 24  RKLMRIYLNTDTFSGQLPAYLTHYVNYPHKNLCDQNWKRFMSCI 155
           RK+   +   +    Q    + H+     +N CD+ W++F + I
Sbjct: 302 RKINAFHEGPENMEWQKGDLVIHFAGCWVENRCDELWQKFYALI 345


>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 45  SRCALIYDNPNQDR 4
           S C ++YD P QD+
Sbjct: 380 SGCLIVYDEPQQDK 393


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -1

Query: 151 HDINRFQFWSHKFLC 107
           + I  F  WSH FLC
Sbjct: 38  NQIKAFNEWSHDFLC 52


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 108 HKNLCDQNWKRFMSCIFSL 164
           + NLC+ NW  +++ + SL
Sbjct: 172 YANLCETNWSHYVNQVPSL 190


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 118 CVTKIGSGLCHVFFRYTNKTT 180
           C+    SG CH FF+     T
Sbjct: 119 CIFHDASGACHFFFKEVGNWT 139


>SPAC3A12.09c |||urease accessory protein UreD |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 290

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 140 PLPILV--TQIFVWIVYVMS*IGGQLSAKRVGVQV 42
           PL ++   T++   I+Y+MS  GG +S  RV + +
Sbjct: 27  PLKLIAPKTKLDFSILYIMSYGGGLVSGDRVALDI 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 823,361
Number of Sequences: 5004
Number of extensions: 13191
Number of successful extensions: 27
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)