Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20o06
(202 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY382628-1|AAR20861.1| 685|Drosophila melanogaster xeroderma pi... 27 2.7
AY382627-1|AAR20860.1| 685|Drosophila melanogaster xeroderma pi... 27 2.7
AY382626-1|AAR20858.1| 685|Drosophila melanogaster xeroderma pi... 27 2.7
AY382625-1|AAR20856.1| 685|Drosophila melanogaster xeroderma pi... 27 2.7
AY382623-1|AAR20853.1| 685|Drosophila melanogaster xeroderma pi... 27 2.7
AY382622-1|AAR20851.1| 685|Drosophila melanogaster xeroderma pi... 27 2.7
AY382620-1|AAR20849.1| 685|Drosophila melanogaster xeroderma pi... 27 2.7
AY382619-1|AAR20847.1| 685|Drosophila melanogaster xeroderma pi... 27 2.7
AF132140-1|AAD33587.1| 745|Drosophila melanogaster excision rep... 27 2.7
AE013599-3150|AAF46689.1| 745|Drosophila melanogaster CG9433-PB... 27 2.7
AE013599-3149|AAM70857.2| 769|Drosophila melanogaster CG9433-PA... 27 2.7
>AY382628-1|AAR20861.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 117 NFCVDSLRNELNRRAVVR*TCRCSSRCALIYDNPNQD 7
N C+DS+ ++NRR V R T + L+ D +D
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREED 193
>AY382627-1|AAR20860.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 117 NFCVDSLRNELNRRAVVR*TCRCSSRCALIYDNPNQD 7
N C+DS+ ++NRR V R T + L+ D +D
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREED 193
>AY382626-1|AAR20858.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 117 NFCVDSLRNELNRRAVVR*TCRCSSRCALIYDNPNQD 7
N C+DS+ ++NRR V R T + L+ D +D
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREED 193
>AY382625-1|AAR20856.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 117 NFCVDSLRNELNRRAVVR*TCRCSSRCALIYDNPNQD 7
N C+DS+ ++NRR V R T + L+ D +D
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREED 193
>AY382623-1|AAR20853.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 117 NFCVDSLRNELNRRAVVR*TCRCSSRCALIYDNPNQD 7
N C+DS+ ++NRR V R T + L+ D +D
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREED 193
>AY382622-1|AAR20851.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 117 NFCVDSLRNELNRRAVVR*TCRCSSRCALIYDNPNQD 7
N C+DS+ ++NRR V R T + L+ D +D
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREED 193
>AY382620-1|AAR20849.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 117 NFCVDSLRNELNRRAVVR*TCRCSSRCALIYDNPNQD 7
N C+DS+ ++NRR V R T + L+ D +D
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREED 193
>AY382619-1|AAR20847.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 117 NFCVDSLRNELNRRAVVR*TCRCSSRCALIYDNPNQD 7
N C+DS+ ++NRR V R T + L+ D +D
Sbjct: 157 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREED 193
>AF132140-1|AAD33587.1| 745|Drosophila melanogaster excision repair
protein ERCC2/XPD protein.
Length = 745
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 117 NFCVDSLRNELNRRAVVR*TCRCSSRCALIYDNPNQD 7
N C+DS+ ++NRR V R T + L+ D +D
Sbjct: 217 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREED 253
>AE013599-3150|AAF46689.1| 745|Drosophila melanogaster CG9433-PB,
isoform B protein.
Length = 745
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 117 NFCVDSLRNELNRRAVVR*TCRCSSRCALIYDNPNQD 7
N C+DS+ ++NRR V R T + L+ D +D
Sbjct: 217 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREED 253
>AE013599-3149|AAM70857.2| 769|Drosophila melanogaster CG9433-PA,
isoform A protein.
Length = 769
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 117 NFCVDSLRNELNRRAVVR*TCRCSSRCALIYDNPNQD 7
N C+DS+ ++NRR V R T + L+ D +D
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREED 277
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,854,417
Number of Sequences: 53049
Number of extensions: 138807
Number of successful extensions: 262
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 24,988,368
effective HSP length: 46
effective length of database: 22,548,114
effective search space used: 450962280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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