Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n22
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    27   0.37 
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    27   0.49 
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    25   2.0  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    25   2.0  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    23   6.1  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    23   8.0  

>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 27.5 bits (58), Expect = 0.37
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 50  PLQPLRGSGRGAYVNTRNTQLVLKAARCRATVR 148
           P+Q  RGS   +++ T + Q  +K  R +AT+R
Sbjct: 83  PIQKSRGSSLKSHLETESQQTPVKRRRRKATIR 115


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = +2

Query: 38  FAPRPLQPLRGSGRGAYVNTRNTQLVLKAARCRATVRPRSTPCWPAP 178
           F  R    + G  R +YV++      L   +   T   R+ PCW  P
Sbjct: 112 FTARISSGMEGFYRSSYVDSDGNTKYLATTQMEPTSARRAFPCWDEP 158


>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 183 VGGAGQHGVDLGRTVARHRAAFNTSCVLRVF 91
           V GAG  G  L  T     A FNT+C+ ++F
Sbjct: 59  VVGAG--GAGLRATFGLAEAGFNTACITKLF 87


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 10  ASGVWRCLALRAAPLTAIAWLGAWRLR 90
           A+G W    + AAP+    W+  +RLR
Sbjct: 310 ATGYWDHSIIDAAPVVTFNWVHTFRLR 336


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 111 SCVLRVFT*APRPEPRNGC 55
           SCV R+FT  P   P  GC
Sbjct: 41  SCVDRIFTTGPAQCPTPGC 59


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 79  WRLRKHA*HAARVKGGAVPR 138
           WRLRK   +  ++ GG  P+
Sbjct: 828 WRLRKAGFNCVKLDGGMTPK 847


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 881,663
Number of Sequences: 5004
Number of extensions: 12500
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)