Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc20n22
(277 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405... 30 0.30
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 28 1.2
01_06_0669 - 31063722-31063856,31064001-31064090,31064275-310643... 27 1.6
07_03_0494 - 18753069-18754214 27 2.8
07_01_1209 + 11535266-11535565,11536524-11537009 27 2.8
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 27 2.8
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 27 2.8
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 26 3.7
10_06_0129 + 11052606-11053211 26 5.0
04_04_1662 - 35149985-35150290,35150548-35150929,35150953-351510... 26 5.0
04_04_1171 - 31455136-31455482,31455805-31458982 26 5.0
03_02_0647 + 10154668-10156041 26 5.0
09_06_0110 + 20923523-20924065 25 6.5
06_03_0417 + 20576716-20576742,20578110-20578345,20578347-205786... 25 6.5
11_04_0009 - 12132781-12133272 25 8.7
08_02_0713 + 20335317-20335916,20336029-20336071,20336278-20336342 25 8.7
08_02_0332 + 15857514-15858113,15858226-15858268,15858474-15858538 25 8.7
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 25 8.7
06_03_0464 + 21043706-21044305,21044418-21044460,21047402-21047421 25 8.7
06_03_0002 - 15280292-15281550,15282714-15282840 25 8.7
05_05_0175 + 22966151-22967614 25 8.7
04_04_0197 + 23499527-23500603 25 8.7
04_04_0066 - 22495396-22495424,22495716-22495758,22495871-224961... 25 8.7
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 25 8.7
02_04_0126 + 19990893-19991372 25 8.7
>05_07_0260 -
28739035-28739085,28739316-28739596,28740545-28740572,
28740653-28740749,28741216-28741272,28741353-28741415,
28741533-28741621,28741779-28741865,28742041-28742162,
28742245-28742500,28742595-28742744,28743120-28743278,
28743820-28743892,28743968-28744024,28744115-28744243,
28744469-28744560,28745220-28745252
Length = 607
Score = 29.9 bits (64), Expect = 0.30
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 25 RCLALRAAPLTAIAWLGA-WRLRKHA*HAARVKGGAV 132
R + RAAP A+AW G +RL AA KGG V
Sbjct: 539 RAVRRRAAPRDAVAWRGGDYRLGAPEGRAASAKGGGV 575
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = +2
Query: 11 RPASGGA*RFAPRPLQPLRG---SGRGAYVNTRNTQLVLKAARCRATVRPRS 157
R SG + P PL P G GRGA T+ + A R+++RP S
Sbjct: 211 RMDSGLSVNLVPPPLAPRHGCQRGGRGAAATTKLSSSTDAAVTIRSSIRPSS 262
>01_06_0669 -
31063722-31063856,31064001-31064090,31064275-31064356,
31064448-31064494,31065074-31065130,31065368-31065433,
31065537-31065558,31065641-31065753,31065903-31065974,
31066839-31066961,31067052-31067141,31067504-31067545,
31067791-31067878,31069167-31069286,31069382-31069434
Length = 399
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 44 PRPLQPLRGSGRGAYVNTRNTQLVLKAARCRATVRPRSTPCWPA 175
P PL RG GRG + +R L L + AT P PA
Sbjct: 13 PPPLLASRGGGRGGALPSRLRTLRLNCSVAEATASGDEAPAPPA 56
>07_03_0494 - 18753069-18754214
Length = 381
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +2
Query: 110 LVLKAARCRATVRPRSTPCWPAPPTEY 190
LVL A PR W APPT +
Sbjct: 67 LVLAGASASVPTSPRRVSAWDAPPTRW 93
>07_01_1209 + 11535266-11535565,11536524-11537009
Length = 261
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -2
Query: 180 GGAGQHGVDLGRTVARH 130
GG QHG DLGR V H
Sbjct: 199 GGFCQHGKDLGRVVTMH 215
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = +2
Query: 20 SGGA*RFAPRPLQPLRGS---GRGAYVNTRNTQLVLKAARCRATVRPRS 157
SG + P PL GS GRGA T+ + AA R+++RP S
Sbjct: 214 SGLSVNLVPPPLARRHGSQRGGRGAATTTKLSSSTDVAATIRSSIRPSS 262
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 22 WRCLALRAAPLTAIAWLGAWRLRK 93
WR L R AP A+ W G W R+
Sbjct: 722 WRRLG-RLAPTVALGWCGRWSTRE 744
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 143 VRPRSTPCWPAPPTE 187
VR TP WP PPTE
Sbjct: 485 VRGSPTPDWPPPPTE 499
>10_06_0129 + 11052606-11053211
Length = 201
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -1
Query: 175 RGPTWGRSRTDSSAAPRRL*HELRVTRVYVSATPRATQWL*GARREALGT 26
R PTW R R PRRL R R++ S T + GA A+ +
Sbjct: 43 RQPTWRRQRLGRRRQPRRL--PRRPPRIWSSGTTSSGSSSAGAASTAISS 90
>04_04_1662 -
35149985-35150290,35150548-35150929,35150953-35151055,
35151186-35151252
Length = 285
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 214 QGACCYPHILSRRRGPTWGRSRTDSSAA 131
Q CC+ +L RRR G+ D++AA
Sbjct: 116 QRVCCWRRLLQRRRRYRRGKDDIDAAAA 143
>04_04_1171 - 31455136-31455482,31455805-31458982
Length = 1174
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 70 LGAWRLRKHA*HAARVKGGAVPRYC 144
L WR+ K A V+GGA+PR+C
Sbjct: 56 LAGWRVGKSGDGA--VRGGALPRHC 78
>03_02_0647 + 10154668-10156041
Length = 457
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 68 GSGRGAYV-NTRNTQLVLKAARCRATVRPRSTPCWPAP 178
G GRGA + + +LV AA R PR TP W AP
Sbjct: 139 GDGRGAKLADFGAARLVSDAAVSRG---PRGTPAWMAP 173
>09_06_0110 + 20923523-20924065
Length = 180
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 137 RGTAPPLTRAACYACLRKRHAPSHAMAVRGAARSA 33
R APP + A + ++ PSHA A AA +A
Sbjct: 52 RPHAPPPQQHAAWPAPQRSKKPSHATATAAAAAAA 86
>06_03_0417 +
20576716-20576742,20578110-20578345,20578347-20578601,
20578731-20579298
Length = 361
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 84 APRPEPRNGCKGRGAKR*APPDAGRQLT 1
+P EPR CKGRG+ + D R T
Sbjct: 202 SPSREPRPLCKGRGSTSSSTGDRARSRT 229
>11_04_0009 - 12132781-12133272
Length = 163
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -1
Query: 187 LSRRRGPTWGRSRTDSSAAPR 125
+ RRRG W R R DS R
Sbjct: 104 IGRRRGEAWRRERRDSKIESR 124
>08_02_0713 + 20335317-20335916,20336029-20336071,20336278-20336342
Length = 235
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 180 GGAGQHGVDLGRTVARHRAA 121
GG G+ GV+ GR V R AA
Sbjct: 178 GGGGEEGVEGGREVERGEAA 197
>08_02_0332 + 15857514-15858113,15858226-15858268,15858474-15858538
Length = 235
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 180 GGAGQHGVDLGRTVARHRAA 121
GG G+ GV+ GR V R AA
Sbjct: 178 GGGGEEGVEGGREVERGEAA 197
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 20 SGGA*RFAPRPLQPLRGSGRGAY 88
SGG RF R + RGSG G Y
Sbjct: 740 SGGGARFGGRDFRRDRGSGGGGY 762
>06_03_0464 + 21043706-21044305,21044418-21044460,21047402-21047421
Length = 220
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 180 GGAGQHGVDLGRTVARHRAA 121
GG G+ GV+ GR V R AA
Sbjct: 178 GGGGEEGVEGGREVERGEAA 197
>06_03_0002 - 15280292-15281550,15282714-15282840
Length = 461
Score = 25.0 bits (52), Expect = 8.7
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 2 VSWRPASGGA*RFAPRPLQPLRGSGRGAYVNTRNTQLVLKAARC 133
V + PA GA R RP++PLR R + T LV AA C
Sbjct: 137 VRFPPAPPGAKR---RPVRPLRSLWRVVLLCTECLSLVRSAAVC 177
>05_05_0175 + 22966151-22967614
Length = 487
Score = 25.0 bits (52), Expect = 8.7
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Frame = -2
Query: 183 VGGAGQHGVDLG--RTVARHRAAFNTSCVLRVFT*APRPEPRNGCKGRGAKR*APPDAGR 10
VGG G + G R R R + V+ +P P PR C G + P A R
Sbjct: 35 VGGCGYGYEEEGGTRRQQRRRRKVSDGHVVAQLLDSPLPTPRRSCCGSSSAAGTPRSAAR 94
>04_04_0197 + 23499527-23500603
Length = 358
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = -2
Query: 189 YSVGGAGQHGVDLGRTVARHRAAFNTSCVLRVF 91
Y GG HG+DLG ++ R ++R++
Sbjct: 67 YDFGGETLHGIDLGNSLLFVRKGIGDRWLVRIW 99
>04_04_0066 -
22495396-22495424,22495716-22495758,22495871-22496130,
22496162-22496531
Length = 233
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 180 GGAGQHGVDLGRTVARHRAA 121
GG G+ GV+ GR V R AA
Sbjct: 188 GGGGEEGVEGGREVERGEAA 207
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/44 (31%), Positives = 17/44 (38%)
Frame = +2
Query: 53 LQPLRGSGRGAYVNTRNTQLVLKAARCRATVRPRSTPCWPAPPT 184
L+P G A N L C T+RP S+ P P T
Sbjct: 375 LKPGGGGVNAAIYNAAGEDLQRATKECADTLRPGSSVAVPLPST 418
>02_04_0126 + 19990893-19991372
Length = 159
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 180 GGAGQHGVDLGRTVARHRAAFNTSCVLRVFT 88
GG G HG D GR R R +S RV T
Sbjct: 18 GGGGGHGFDDGRRQRRVRLRLVSSARKRVAT 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,560,519
Number of Sequences: 37544
Number of extensions: 149725
Number of successful extensions: 502
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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