Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n22
         (277 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK024131-1|BAB14835.1|  411|Homo sapiens protein ( Homo sapiens ...    29   2.6  
AK128837-1|BAC87637.1|  286|Homo sapiens protein ( Homo sapiens ...    28   4.6  

>AK024131-1|BAB14835.1|  411|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14069 fis, clone HEMBB1001562, weakly similar to
           CYLICIN II. ).
          Length = 411

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +2

Query: 50  PLQPLRGSGRGAYVNTRNTQLVLKAARCRATVRPRSTPCWPAPP 181
           P Q LRG GRG  +   +T L + +A       P S P  P PP
Sbjct: 366 PKQELRGRGRGILILPAHTTLSVNSAG-----SPESAPLGPRPP 404


>AK128837-1|BAC87637.1|  286|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46366 fis, clone TESTI4051388. ).
          Length = 286

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = -1

Query: 178 RRGPTWGRSRTDSSAAPRRL*HELRVTRVYVSATPRATQWL*GARREALGTSRRRTP 8
           R  PT   +RT  +A+P R       TR    A+PR T       R     S RRTP
Sbjct: 101 RTPPTESPARTPPTASPARTPPRASPTRTPPRASPRRTPSTASPTRTPPRASPRRTP 157


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,105,476
Number of Sequences: 237096
Number of extensions: 614121
Number of successful extensions: 1710
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1710
length of database: 76,859,062
effective HSP length: 69
effective length of database: 60,499,438
effective search space used: 1330987636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)