Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n22
         (277 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr...    25   5.8  
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr...    25   5.8  
Z70780-13|CAD18872.2|  368|Caenorhabditis elegans Hypothetical p...    25   5.8  
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p...    25   5.8  
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr...    25   5.8  
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ...    25   5.8  
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ...    25   5.8  
AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical...    25   5.8  

>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical protein
            T06D8.1b protein.
          Length = 3653

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 129  RAAFNTSCVLRVFT*APRP 73
            R  F TSCV   FT  PRP
Sbjct: 3444 RMCFETSCVRAAFTRFPRP 3462


>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical protein
            T06D8.1a protein.
          Length = 3719

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 129  RAAFNTSCVLRVFT*APRP 73
            R  F TSCV   FT  PRP
Sbjct: 3444 RMCFETSCVRAAFTRFPRP 3462


>Z70780-13|CAD18872.2|  368|Caenorhabditis elegans Hypothetical
           protein F46B6.3b protein.
          Length = 368

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 187 LSRRRGPTWGRSRTDSSAAPRRL*HELRVT 98
           +  ++G  W +  TD  +AP +  H+L VT
Sbjct: 300 VGEQQGEDWIKKLTDPKSAPMKKKHDLSVT 329


>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
            protein T06D8.1b protein.
          Length = 3653

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 129  RAAFNTSCVLRVFT*APRP 73
            R  F TSCV   FT  PRP
Sbjct: 3444 RMCFETSCVRAAFTRFPRP 3462


>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical protein
            T06D8.1a protein.
          Length = 3719

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 129  RAAFNTSCVLRVFT*APRP 73
            R  F TSCV   FT  PRP
Sbjct: 3444 RMCFETSCVRAAFTRFPRP 3462


>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
            protein T06D8.1b protein.
          Length = 3653

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 129  RAAFNTSCVLRVFT*APRP 73
            R  F TSCV   FT  PRP
Sbjct: 3444 RMCFETSCVRAAFTRFPRP 3462


>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
            protein T06D8.1a protein.
          Length = 3719

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 129  RAAFNTSCVLRVFT*APRP 73
            R  F TSCV   FT  PRP
Sbjct: 3444 RMCFETSCVRAAFTRFPRP 3462


>AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18b protein.
          Length = 586

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 98  RNTQLVLKAARCRATVRPRSTPCWPAPPTEY 190
           R T+L+ KA   +A      +P W  P T+Y
Sbjct: 40  RTTRLMWKAQTEQAAASSHQSPKWNEPDTDY 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,212,852
Number of Sequences: 27780
Number of extensions: 82578
Number of successful extensions: 221
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)