Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n22
         (277 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   2.8  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   3.7  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   3.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   4.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   6.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    20   6.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 2.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 155 STPCWPAPP 181
           +TPC P+PP
Sbjct: 391 ATPCTPSPP 399


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 149 DGQ*RGTAPPLTRAACY 99
           DGQ RG  P   R  CY
Sbjct: 55  DGQFRGEFPQDERLMCY 71


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 20.6 bits (41), Expect = 3.7
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 149 DGQ*RGTAPPLTRAACY 99
           DGQ RG  P   R  CY
Sbjct: 29  DGQFRGEFPQDERLMCY 45


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 115 HELRVTRVYVS 83
           H+LRVTR Y S
Sbjct: 238 HKLRVTRCYSS 248


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 89  VNTRNTQLVLKAARCRATVRPRSTPCWPAPPTE 187
           ++ R  + V   + CR    P +T   P  PTE
Sbjct: 428 LHPRELEAVNLGSACRIHGSPATTAAPPQLPTE 460


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
          protein precursor protein.
          Length = 153

 Score = 19.8 bits (39), Expect = 6.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 81 PRPEPRNGCKGR 46
          P+P P   C+GR
Sbjct: 45 PKPIPSYACRGR 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,419
Number of Sequences: 438
Number of extensions: 943
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)