Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc20n13
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    27   1.7  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    27   3.0  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    27   3.0  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    26   5.3  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   7.0  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   7.0  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   7.0  
SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase |Sch...    25   7.0  

>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 512 KNEIQKLNWTEHEIIEN 562
           K+EI + N+TEHEI++N
Sbjct: 10  KDEIYQKNYTEHEILQN 26


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 338 LRAPLVYKYATSFLKQILEKF-KESGINDIVILTSS 442
           +R  L  KYATSF  ++ EK+  E G  ++++ TSS
Sbjct: 777 IRIELDIKYATSFYDELNEKWCSEEGEYNVLVGTSS 812


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 415 YTAFFEFFKNLFQK*RCIFIH 353
           +T   EF  NLF K RC+ +H
Sbjct: 394 HTMISEFLTNLFTKLRCVLMH 414


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 428 ILTSSYAHEKKHIMTSPFRYLVNEYSSYKNE 520
           ++  SY  EK+++   P  Y+   YSS  N+
Sbjct: 187 VIQKSYGSEKRYLCPPPMVYINGNYSSIFNQ 217


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = +2

Query: 197 RMKKIASINSIA--IVPILG--YDPYDHNTIDLSMCCELYKCDEKKII 328
           R K   S NSIA  + P  G  YD + HN I  + C      DEKK I
Sbjct: 115 RKKAQDSSNSIAERVSPPPGFCYDVHPHNNIACAKCGNELVSDEKKSI 162


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 173 MQAVPHYQLQHWVLRQYNRVNYCYQVFSTLIPFFFI 66
           MQA+   Q   W L +Y+ + +   V  + IP  FI
Sbjct: 38  MQAIHDIQTYRWDLSKYDHLEFPGAVKRSFIPSLFI 73


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 503 SSYKNEIQKLNWTEHEIIENGIKILGGGFASLL 601
           +SY + I  + W + E+    ++ LG GF++ +
Sbjct: 444 ASYASGIGNIPWQQAELFPMEVRALGAGFSTAI 476


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 284 SMCCELYKCDEKKI-IVLQLRAPLVYKYATSFLKQILEKFKESGINDI 424
           SM   +Y  DE K  I   L AP++     SF+K++ +  +E  ++ +
Sbjct: 500 SMVTTIYFPDESKYGIYAPLFAPILIPLLISFIKEVKDMLRERKLHRV 547


>SPBC115.03 ||SPBC839.18c|gfo/idh/mocA family oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 615 IHIP*SKEAKPPPSILIPFSMISCSVQFNFCI 520
           +H P +K  K P ++++  + +SC  +  FCI
Sbjct: 223 LHYP-AKGNKLPINVILSSTNVSCGCEMRFCI 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,625
Number of Sequences: 5004
Number of extensions: 62332
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)